Penaeus vannamei (Pacific white shrimp): 113830308
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Entry
113830308 CDS
T06111
Name
(RefSeq) cartilage oligomeric matrix protein
KO
K04659
thrombospondin 2/3/4/5
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm04145
Phagosome
pvm04512
ECM-receptor interaction
pvm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113830308
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
113830308
09142 Cell motility
04820 Cytoskeleton in muscle cells
113830308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvm04131
]
113830308
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvm04147
]
113830308
00536 Glycosaminoglycan binding proteins [BR:
pvm00536
]
113830308
Membrane trafficking [BR:
pvm04131
]
Endocytosis
Phagocytosis
Opsonins
113830308
Exosome [BR:
pvm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113830308
Exosomal proteins of colorectal cancer cells
113830308
Exosomal proteins of bladder cancer cells
113830308
Glycosaminoglycan binding proteins [BR:
pvm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113830308
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
CBM_14
Motif
Other DBs
NCBI-GeneID:
113830308
NCBI-ProteinID:
XP_027239311
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All DBs
Position
25:848633..865281
Genome browser
AA seq
869 aa
AA seq
DB search
MDWNGVILILIVGITVGVAADDCPGEGRFPDSSICGAYVDCVDDGNGGYNARKGDCDGFM
YNATSGECSKDGMCVNSRHTRSVTPDMNPYSHLCEAKPDGFLCANCKTQVMCVQGQAFVR
HCIEGDFCLNKLQFAGGVCYPGAPVQCTCERPHEFRVDYYDPQRFFACAESYSEPVAYKC
LDGMAFHESSSQCLNNAGFPPCTVSGVFANPNNCGEYYTCIALRHGFLQRFSMCSNNTLF
NEKTQTCEDPCIYQFECQEDGRFGDPLNVRYYFECVVQNGQMKKSRYSCPEGYIWYAENP
GVGRCVEDNGDYYFDYPFRNCKNPGDLCHDQNYCAQAPCYPDVICRSLSVAPHFICGPCP
AGFTGDGITCKGLECPVGYAGTSGECARDSDLDGYPDSELSCSEKYCRQDNCIYKPNSGQ
EDADGDGDGDACDSDADGDGFDKNTDNCLLISNPLQEDLDSDGWGNVCDNCPAVSNPSQK
DTDGDEMGDECDDDIDNDGTANINDNCRFTANANQNDLDRDGLGDECDNCPRHPNVGQDD
VDEDLLGDACDDDADLDSDGVEDSIDNCPDVANSDQSDVDGDGSGDACDTDSDGDGVDDT
GDNCALIPNPGQLDSDGDGRGDACTDDFDGDQIIDTEDVCINNPRVRSTDFRKLQTVALN
PGAATTPPVWVIHDNGTEIHQLVNSDPAIALGDHSLGNVDFEGTFFIEDLTDDDFVGFVF
SYQSNAKFYVMMWKQATQRWFSKAERGFTLKLINSRTGPGTELRDALWVTRSTKSQAKLL
WQDNRIGWSPNVAYRWLLHHRPGIGTMRFYLYKGDYQVTDSGNIYDDTLKGGRLGLFCFS
QEKIIWSNIKYTCSDDIPADMAADLNSRP
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggactggaacggagtaatactgattctgattgtgggaataactgttggcgtggcagca
gatgactgtccaggggaagggaggtttcccgattcaagtatctgcggtgcttacgtagat
tgtgtagacgacggaaacggcggctataatgcaagaaaaggtgattgtgacggcttcatg
tacaacgccacctctggggaatgctccaaagacggcatgtgtgttaactcgcggcacacc
cggagtgttaccccagacatgaacccatattcccatctgtgtgaagccaagcctgatggt
ttcctgtgtgcaaattgcaaaactcaggtcatgtgtgtgcagggacaggccttcgttcgt
cactgtattgagggtgacttttgtttaaataaactccagtttgcaggaggcgtgtgctat
ccaggtgcccctgtgcagtgcacatgtgaaaggcctcatgaatttcgtgtggattattat
gacccacagaggttcttcgcttgcgcagaatcttattcagaaccagttgcctataaatgt
ctggatggaatggcatttcatgaatcctcttcacagtgtctaaacaatgccggatttcca
ccatgcaccgtatctggagtttttgcgaacccaaataattgtggcgaatactatacatgc
attgccttgagacatggatttcttcaaaggttctccatgtgcagtaataatactttgttc
aatgagaaaacgcaaacctgtgaagatccttgtatttatcagtttgagtgccaagaggac
gggcggttcggtgatccccttaatgttcgttattactttgagtgcgtcgtgcagaatggg
caaatgaagaagtctcgttactcttgtcctgagggttatatttggtacgctgaaaaccca
ggagttggacgatgtgtggaagataacggggactactactttgactaccccttccgcaac
tgcaagaatcctggggacctgtgccacgatcaaaattattgtgcgcaggccccttgttat
cctgatgttatctgtagatccttaagcgtggctccccacttcatctgtggtccttgccca
gctggatttactggagatgggattacatgcaagggcttagagtgtccagttggctatgcg
gggaccagtggtgaatgtgctcgtgactctgaccttgatggctacccagactccgaacta
agttgttcagaaaaatattgccgtcaggataactgcatttataaaccaaattccggccaa
gaggatgcagacggcgatggcgatggcgatgcctgtgacagtgatgcagatggggatggc
tttgataagaatacagataactgtcttctgatatccaatccattacaagaagacttggat
tcagatggatggggaaatgtctgtgataactgccctgcggtgtctaacccgagccagaag
gatactgacggggatgaaatgggcgacgaatgtgacgatgatattgataatgatggaacc
gctaatattaacgataattgtcgcttcactgcaaatgccaaccaaaacgatcttgatcgg
gatggtctgggcgatgagtgcgataactgcccccgccatcccaacgttggccaagatgat
gttgatgaagacttgctgggagatgcatgtgatgatgatgctgacttggatagtgatggc
gtggaggacagtatagacaactgcccagatgtggccaacagtgaccagtcagacgtagat
ggtgatggcagtggcgatgcctgtgatactgacagcgacggtgatggcgtggatgacacg
ggtgataactgtgcgctgataccgaatccaggccaattggacagtgacggggacggccgg
ggtgatgcctgcactgacgacttcgacggtgaccaaattatcgatacagaagatgtctgc
atcaacaatcctcgtgtgcgctcgacagatttcagaaaacttcagacagtggcgttaaac
ccaggggctgcgaccactcctccagtttgggtcatccatgataatggtacagaaattcac
cagttggtgaactctgacccagctatagcattgggtgatcactcattgggcaatgttgac
tttgaagggaccttcttcattgaagatctaactgatgatgattttgttggctttgtattt
agctatcaaagcaatgccaagttttatgtcatgatgtggaagcaggctacacagcgttgg
ttcagcaaggcagaaagaggctttactctgaagctgatcaactccagaacaggtcctgga
acagaactaagggatgcattgtgggtcactcgttctacaaaatcacaggcaaaactgctt
tggcaggataacagaattggatggtcgccaaatgtggcataccgttggctgcttcaccac
cgccctggtattggcaccatgaggttctacttgtacaaaggggattaccaggtgacagac
tctggaaacatttatgatgacacactaaaaggaggccgattgggactcttctgcttctct
caagaaaaaattatctggtccaacatcaagtatacttgttcagatgatatccctgcggac
atggctgctgacctaaattcgcggccatga
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