Penaeus vannamei (Pacific white shrimp): 113830397
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Entry
113830397 CDS
T06111
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113830397 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113830397 (Mtr4)
03041 Spliceosome [BR:
pvm03041
]
113830397 (Mtr4)
03009 Ribosome biogenesis [BR:
pvm03009
]
113830397 (Mtr4)
03016 Transfer RNA biogenesis [BR:
pvm03016
]
113830397 (Mtr4)
Enzymes [BR:
pvm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113830397 (Mtr4)
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113830397 (Mtr4)
Spliceosome [BR:
pvm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113830397 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
113830397 (Mtr4)
Ribosome biogenesis [BR:
pvm03009
]
Eukaryotic type
Pre-60S particles
Helicases
113830397 (Mtr4)
Transfer RNA biogenesis [BR:
pvm03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113830397 (Mtr4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AIF-MLS
ATPase_2
Motif
Other DBs
NCBI-GeneID:
113830397
NCBI-ProteinID:
XP_069985818
LinkDB
All DBs
Position
14:10528050..10547831
Genome browser
AA seq
1022 aa
AA seq
DB search
MACFGDDLFDFVDEDNENQNENLPEIGEGNEDENEKAAQELNQLLGKKRMSEDADKQVIK
KARAVVDASETQMKLTEDMPRIAVHIIETVEACTHEVAVPPGETYIPLQPPSEKPAKVYP
FILDPFQKEAILCIDNNQSVLVSAHTSAGKTVVAEYAIAMCLHNKQRVIYTTPIKALSNQ
KYRDFSDEFTDVGLLTGDVTINPNASCLIMTTEILRSMLYRGSEVTREVGWVIFDEIHYM
RDKERGYVWEETLILLPSTVHFVFLSATIPNASQFAQWICYLHHQPCHVVYTDYRPTPLQ
HYIFPAGGEGIYLAVDELGKFREDNFNTAMAILQDAPEQPESGSKGKGGAAKGSSDCFKI
VKMIMERNFAPVIIFSFSKKECEAYALQMSKLDFNIADEKQLVNEVFQNAIALLSEEDRE
LPQVVSVLPLLKRGIGIHHGGLLPIIKETIEILFGEGLIKCLFATETFAMGLNMPARTVL
FTSIRKFDGRDFRWLTSGEYIQMSGRAGRRGKDDKGIVIMMVDEKLNTAVVKNLVQGKAD
PINSAFHLTYNMVLNLLRVEQINPEYILERSFFQFQNYSSIPALCDRVSEGEDELASMVI
ERESEVESYYKLQQTIENLLKERHSFITRYTYILPFLQPGRLVRVKNNDDNFGWGVVLSY
KKQENKKDPLKPPSVTVDIILRVSEESAAKKVTSDLKPPKPGEKSEPVVMTVMVKVIQDL
SAVRLKLPSDLKPLDQRIMVVKMVDEALRRVPENQFLLDPVKNMKIKDEAFLDVMSKLDK
FKARMNSHKLHTDPARDRLCEAFAKKMEVRKTLENAETDLKKAKSVLQMDELKCRKRVLR
RLGYATSQDVIERKGRVACELSSADELLITEMLFHGLFNDLSAAQTCALLSTFVCDEKSS
QLPKLGEELSGPLRQMQDIARRIARVSHECKLEIDEENYVEQFRPFLMDIVYDWCNGASF
MELCKKTEIFEGSIIRAMRRLEELLRQMIQASKAIGIDLENKFSEGVKLLKRDIVFAASL
YL
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgctttggcgatgatctttttgattttgtagacgaagataatgagaaccagaat
gaaaacttgcctgaaattggcgaagggaatgaggatgaaaatgagaaggcagcacaagaa
cttaatcagctgttggggaagaaacgtatgtcagaagatgctgataaacaagtgataaag
aaagcgagagctgttgttgatgcatctgagacacaaatgaagttaacagaagatatgccc
agaatagcagttcacatcattgagacagtcgaggcatgtactcatgaagtggcagtaccc
cctggtgagacctacattccactccagccaccaagcgaaaagccagcaaaggtgtatcca
tttatactagatccattccagaaagaagctatactttgcattgacaacaatcagtcagtg
ttagtgtctgcccacacatctgctggtaaaactgtggtagcagaatatgcgatagctatg
tgcttacataacaaacagagagtcatctatacaaccccaatcaaggccctgagtaaccag
aagtaccgtgacttcagtgatgagttcacggatgttggccttctgacaggagatgtgacc
atcaacccaaacgcttcgtgcctcattatgaccacagagattctgcgttccatgctttat
agaggttcggaggtgacaagagaggtgggctgggtcatatttgacgagatccattacatg
agagacaaggaaagaggttatgtttgggaggagacactcattcttctgccatccacggtt
cattttgtatttttatctgcaaccatccctaatgccagtcagtttgcccagtggatttgt
taccttcaccaccagccttgccatgtggtgtacactgactacagaccaacacctcttcaa
cactacatcttcccagctggaggagagggaatctatttggctgtggatgagttgggcaag
tttagggaggacaactttaacacagctatggctattctgcaagatgctccagagcagcct
gaatctgggtccaaggggaaaggaggtgcagccaaagggagttctgactgcttcaagatt
gtcaagatgatcatggagagaaactttgctcctgtcatcatcttcagtttctccaagaag
gagtgtgaggcttatgcattgcagatgtcgaagctggacttcaatattgccgacgagaaa
cagctggtgaatgaggtgttccagaatgccattgctctcctctcagaagaagaccgtgag
cttccacaggtggtgtcagtgctgccactactcaagagaggcattggtattcatcatgga
ggtctgctgcctatcatcaaggaaacaatagagatcttgtttggagaaggtttgatcaag
tgtttatttgcaactgagacctttgccatgggacttaacatgcctgccaggactgtcctg
tttacctccattcgcaagtttgatggaagagatttcagatggctaacttcgggagaatac
atccagatgtcaggtcgagctggtagaagaggaaaggatgacaaaggtattgtcatcatg
atggtagatgagaagctgaacacagctgttgtcaagaatctagtgcagggaaaagcagac
cccatcaactctgctttccatctgacatataacatggtgctgaacctgctgcgtgtggaa
cagattaacccagagtacatcctggagagatctttcttccagtttcagaattattcctcc
attccagcactgtgtgaccgtgtgagtgagggagaagatgagcttgcttctatggtcata
gaaagggagtcagaagtagagagttactacaagttgcagcagaccattgagaacctcttg
aaggaaaggcacagcttcataaccagatacacatacatcttacctttcctgcagcccggg
agacttgtcagagttaaaaacaatgacgataattttggttggggtgttgtgttgagttac
aagaagcaagaaaacaagaaagatcctttaaagccaccatctgtaacagtggacatcatc
ttacgagtgtctgaggaatcggcagcaaaaaaggtgacttctgatctgaagcctcctaaa
ccaggggaaaagagtgaaccagtggtcatgacagtgatggtgaaggtcatccaagattta
tctgccgtaagactgaagctacctagtgacctaaagcccttggatcagcgtatcatggtt
gtcaagatggtggatgaggcattgaggcgtgtcccagagaaccagttcttgcttgatcct
gtaaagaacatgaagattaaggatgaggccttcttggatgtcatgtccaaactggataag
ttcaaagccagaatgaattcccacaaactccatacagatcctgcacgagatagattatgc
gaggcatttgcgaagaagatggaggtcaggaagacacttgagaatgctgagaccgactta
aagaaagcaaagagtgtattacaaatggatgaactgaagtgccgcaagcgtgtcttgcga
cgccttggctatgccacatcgcaggatgtcattgaaaggaaaggcagagtggcttgtgaa
ttgtcctcggctgatgaactcctcattactgaaatgctcttccatggtctattcaatgat
ctatcagctgctcagacctgtgcattactaagtacatttgtgtgcgatgagaagagttca
cagcttccgaagttgggtgaagaattgtcaggacccttaagacagatgcaagacattgct
cgtcgcattgccagagtcagccatgaatgtaaattagagattgatgaagaaaattatgta
gagcagttcagaccatttttgatggatattgtatatgactggtgcaatggtgcatcattc
atggaactctgcaaaaagacagaaatctttgaaggaagcataattcgagccatgcgtcgt
ctagaggagctgctgagacagatgattcaggcctctaaagccataggaattgaccttgaa
aataaattctcagagggagtaaagcttttgaagagagatattgtgtttgctgcaagtctt
tacttgtaa
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integrated database retrieval system
