Candidatus Planktophila vernalis: A7sIIA15_01585
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Entry
A7sIIA15_01585 CDS
T05319
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pvn
Candidatus Planktophila vernalis
Pathway
pvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7sIIA15_01585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvn03021
]
A7sIIA15_01585
03019 Messenger RNA biogenesis [BR:
pvn03019
]
A7sIIA15_01585
Transcription machinery [BR:
pvn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A7sIIA15_01585
Messenger RNA biogenesis [BR:
pvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A7sIIA15_01585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
NACHT
PIP5K
DUF5662
CDC45
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASY19594
UniProt:
A0A249KS30
LinkDB
All DBs
Position
290678..292246
Genome browser
AA seq
522 aa
AA seq
DB search
MTTEIEPVRSNSPELSAMTLPKLKTVATQLGVDGAAKMKKDDLVEAIADLQAKNREAAKA
EREARREARNKSKKEAKSSNNSASNEDSDDDGEDSPPQSNTERGNRNERFDRNDRHARGR
DRNRDRNRDRGPREEREPVIGEDDVLVPVGGLLDILDSYAFIRTAGYLPGPNDVYVSLQQ
VRKNGLRKGDVVTGQVRQPREGETKQKFNALITLETVNGMTPEEARNRVEFGKLTPLYPQ
ERLRLETEPNVLTTRVIDLIAPIGKGQRGLIVSPPKAGKTMVLQSIANAITTNNPECHLM
VVLVDERPEEVTDMQRSVKGEVIASTFDRPADDHTTIAELAIERAKRLVELGHDVVVLLD
SITRLGRAYNIAAPASGRILSGGVDSAALYPPKKFFGAARNIEDGGSLTILATALVDTGS
RMDEVIFEEFKGTGNMELILDRKMADKRIFPAVNVVASGTRKEEILMGSEELNIVWKLRR
VLHALEPQAALELLLEKMKGTKSNVEFLMQIQKTTSGPDDSK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagaaattgaacctgtacgttcgaatagtcctgagctttctgcaatgaccctg
cctaagttaaagacagttgcaacacaactaggtgtagatggcgcagcaaagatgaagaag
gacgatcttgtagaggcgatcgctgatttacaggctaagaaccgcgaagctgcaaaagct
gaacgcgaagcccgccgcgaagcccgcaataagagcaagaaggaagccaagagctctaac
aactctgcttcaaatgaagattcagatgatgatggcgaagattcaccaccacagagcaac
accgaacgcggaaaccgcaacgagcgctttgatcgcaatgaccgccatgcgcgtggacgt
gatcgcaaccgtgatcgcaaccgtgaccgtggaccacgcgaagaacgtgaaccagtaatt
ggtgaagacgacgtcttggtaccagtaggtggcttactcgatattctcgatagctatgca
tttattcgcacagctggttaccttccaggacctaacgatgtctatgtttcattgcagcaa
gtgcgcaaaaacggactccgcaagggcgatgttgtaactggccaggttcgccaacctcgt
gagggtgaaactaagcagaagttcaacgcacttattactcttgaaacagttaatggaatg
actccggaagaagcgcgcaatcgcgttgaattcggcaagttgactcctctttatcctcag
gagcgcttgcgccttgagactgagccaaatgtattgaccacccgtgttatcgatttgatt
gcacccattggtaaaggtcagcgcggacttattgtttcgcctcctaaggctggtaagaca
atggttttgcagtcaattgctaacgcaatcacaacaaataacccagagtgtcacttgatg
gttgttctagttgatgagcgtccagaagaagttacagatatgcagcgctcagttaagggt
gaagttattgcttcaactttcgaccgcccagcagatgaccacacaacaattgcagaactt
gcaatcgagcgcgcaaagcgtcttgttgaactaggtcacgatgtagttgttcttcttgac
tcaatcactcgtttgggccgtgcatacaacatcgcagccccagcatcaggtcgaattctc
tctggtggtgttgattcagcagctctctatccacctaagaagttctttggtgctgctcgt
aatattgaagatggcggatcactcacgattcttgcaacagcacttgttgacacaggttct
cgtatggatgaagttattttcgaagagttcaagggaactggaaacatggagctcatcctt
gatcgtaagatggctgataagcgcatcttccctgcggttaacgttgttgcatctggaaca
cgtaaggaagaaatccttatgggttcagaagaactcaatattgtttggaaactccgtcgt
gttcttcacgcacttgagccacaagcagcacttgaacttcttcttgagaagatgaagggc
actaagtccaacgtcgaattcttgatgcaaatccagaagacaacgtcaggtcctgacgac
tcaaagtaa
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integrated database retrieval system
