Candidatus Planktophila vernalis: A7sIIA15_05305
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Entry
A7sIIA15_05305 CDS
T05319
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
pvn
Candidatus Planktophila vernalis
Pathway
pvn03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
A7sIIA15_05305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvn03019
]
A7sIIA15_05305
03009 Ribosome biogenesis [BR:
pvn03009
]
A7sIIA15_05305
Messenger RNA biogenesis [BR:
pvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A7sIIA15_05305
Ribosome biogenesis [BR:
pvn03009
]
Eukaryotic type
Pre-60S particles
RNases
A7sIIA15_05305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ASY20263
UniProt:
A0A249KTX3
LinkDB
All DBs
Position
1020887..1021447
Genome browser
AA seq
186 aa
AA seq
DB search
MPNEQPNLIWIDCEMTGLSLEKDVLVEIAVLVTDSELNVIGDGVDVVIKASAAQLAGMNE
FVTQMHTTSGLITEIPNGVSVTEAEDLIIKYLESANTLAGKSPLAGNSVSVDRSFIARDM
PRLNDYLHYRTIDVSSIKELARRWYPKAYFNAPAKTGNHRALGDIQDSIAELAYYRSAVF
VPGDEQ
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacgaacagcccaacctgatctggatcgactgcgaaatgaccggactttccctg
gaaaaagacgtcctggtcgaaatagctgtcctagtcaccgactcagaattaaacgtcatt
ggtgatggcgttgatgtggtgattaaggcgagcgctgcgcagttggccggaatgaatgag
ttcgtcactcaaatgcacaccacctctggattaatcactgaaatccccaatggtgtttca
gtaacagaggccgaagatttgattattaaatatctagagagtgcaaacactttggcaggt
aaatctccattagctggcaactcagtctctgttgatcgctctttcatcgcccgcgatatg
ccacgtcttaatgactacctgcactatcgcaccatcgatgtctcatcgataaaagagttg
gcaaggcgctggtatcccaaggcctacttcaacgccccggcaaagacgggcaatcacagg
gctctgggcgatattcaagattcaattgcagaacttgcgtattaccgcagcgcagtattt
gttccaggtgatgagcagtaa
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