Pteropus vampyrus (large flying fox): 105288296
Help
Entry
105288296 CDS
T07815
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pvp
Pteropus vampyrus (large flying fox)
Brite
KEGG Orthology (KO) [BR:
pvp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvp03016
]
105288296 (RTCB)
Enzymes [BR:
pvp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
105288296 (RTCB)
Transfer RNA biogenesis [BR:
pvp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105288296 (RTCB)
Prokaryotic type
tRNA splicing ligases
105288296 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
105288296
NCBI-ProteinID:
XP_023383224
UniProt:
A0A6P6C793
LinkDB
All DBs
Position
Unknown
AA seq
418 aa
AA seq
DB search
MSRNYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKLLADRESLLIWTCC
PHVPDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFL
TRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPL
IAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQD
VLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcaactacaacgatgagctgcagttcctggaaaagatcaataaaaactgctgg
agaatcaagaaaggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggaaaaattaatgtttgaggaattaaggaatgcctgtcgaggtggcggtgtcggc
ggcttcctgcctgccatgaaacaaattggcaatgtggcagccctgcccgggattgttcat
cgatctattgggcttcctgatgtccattcaggttatgggtttgctattgggaatatggca
gcctttgatatgaatgaccctgaagcagtggtgtccccaggtggtgtcggatttgacatc
aactgcggggtccgtttgctgagaaccaatttagatgaaggtgatgtccagcctgtgaag
gagcaacttgcccaagctatgtttgatcacatccctgttggggtgggatcaaaaggtgtc
atccccatgaatgccaagctcctggcggacagagaaagcttgctgatttggacttgttgc
cctcatgttccagatgccctagttgctatggaaaaagccatgaagagagacaagattata
gtcaatgatcgtcagttggcttgtgctcgaatcgcttccccagagggtcaggactacctg
aaggggatggcggcggctgggaactacgcctgggtcaaccgatcttccatgaccttctta
acccgtcaggctttcgccaaggtcttcaacacaacccctgatgacctggacctgcacgtg
atctatgatgtttctcacaacattgccaaagtggagcagcatgtggtggacggaaaggag
cggacactgctggtgcacaggaaggggtccacccgcgctttcccgcctcaccacccgctc
attgctgtggactaccagctcactggacaaccagtgctcattggtggcaccatgggaacc
tgtagttatgttcttactggcactgagcagggcatgactgagacctttggaacaacctgt
cacggagcgggccgtgcattgtcccgagcaaaatctcgacgtaatttagatttccaggat
gtcttagacaaattggcagatatgggaattgcaattcgtgttgcctcaccaaaactggtt
atggaagaggctcctgagtcctataagaatgtgacggatgtggtgaacacctgccatgat
gctggaatcagcaagaaggccattaaactgagaccaattgccgttatcaaaggatag
DBGET
integrated database retrieval system
