Pteropus vampyrus (large flying fox): 105292089
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Entry
105292089 CDS
T07815
Symbol
SCN1A
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 1 subunit alpha
KO
K04833
voltage-gated sodium channel type I alpha
Organism
pvp
Pteropus vampyrus (large flying fox)
Pathway
pvp04728
Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:
pvp00001
]
09150 Organismal Systems
09156 Nervous system
04728 Dopaminergic synapse
105292089 (SCN1A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pvp04040
]
105292089 (SCN1A)
Ion channels [BR:
pvp04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
105292089 (SCN1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
FUT8_N_cat
PFF1_TM
FraC
Motif
Other DBs
NCBI-GeneID:
105292089
NCBI-ProteinID:
XP_011358493
UniProt:
A0A6P3Q5N2
LinkDB
All DBs
Position
Unknown
AA seq
1990 aa
AA seq
DB search
MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKN
LPFIYGDIPPEMVSEPLEDLDPYYINKKFSMLIMCTILTNCVFMTMSNPPDWTKNVEXTF
TCIWDFETIGKLPQERRDSESNRRPFKNRYVTEFVSLGNFSALRTFRVLRALKTISVIPG
KKYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLS
VFALIGLQLFMGNLRNKCVQWPPTNASLEEHSIEKNMTMNYNGTLVNETVIEFDWKSYIQ
DSRYHYFLEGFLDALLCGNSSDAGQCPEGYMCVKAGRNPNYGYTSFDTFSWAFLSLFRLM
TQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYEEQNQATLEEAEQ
KEAEFQQMLEQLKKQQEAAQQAAAVTASEHSREPSAAGGLSDSSSEASKLSSKSAKERRN
RRKKRKQKEQSGGEEKDEDEFHKSESEDSIRRKGFRFSIEGNRLTYEKRYSSPHQSLLSI
RGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFEDNESRRDSLFVPRRHGERRN
SNLSQTSRSSRMLAVFPTNGKMHSTVDCNGVVSLVGGPSVPTSPVGQLLPEVIIDKPATD
DNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASILTNTVEELEESRQKCPPCWY
KFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVLNTLFMAMEHYPMTDHFNHV
LTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVTLSLVELGLANVEGLSVLR
SFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDC
VCKIASDCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLTVFMMVMVIG
NLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMHKGIAYVKRKIYEFIQQSFV
RKQKILDEIKPLDDLNNKKESCMSNHTTEVGKDLDYLKDVNGTTSGIGTGSSVEKYIVDE
SDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEESKEKLNESSSSSEGSTVDI
GAPAEEQPVVEPEETLEPEACFTEGCVQRFKCCQISVEEGRGKQWWNLRRTCFQIVEHNW
FETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGYQTY
FTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNA
LLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINTTNGEMFEIDDVNNHSDCLNL
IERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYAAVDSRNVELQPKYEENLYM
YLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKP
QKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMVETDDQSEYVTTILSRINLV
FIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIR
LARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREV
GIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCDPKKDNPGSSVKGDCGNP
SVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDA
TQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGDRIHCLDILFAFTKRVLGES
GEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAVIIQRAYRRHLLKRTVKQAS
FMYNKNKIKGGTNLLIKEDMLIDRINENSITEKTDLTMSTAACPPSYDRVTKPIVEKHEQ
EGKDEKAKGK
NT seq
5973 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaacagtgcttgtaccaccaggacctgacagcttcaacttcttcaccagagaa
tctcttgcggctattgaaaggcgcattgcagaagagaaggctaagaatcccaaaccagac
aagaaagatgatgacgaaaatggcccaaagccaaatagtgacttggaagctggaaagaac
cttccttttatttatggagacatccctccagagatggtgtcagagccgctggaggacctg
gacccgtactatatcaataaaaaattcagcatgctaattatgtgcactattttgacaaac
tgtgtgtttatgacaatgagtaaccctcctgactggacaaagaatgtagagtaaacattt
acatgtatttgggattttgaaactattggtaaacttccccaagaaagaagagattcagaa
agtaatagaaggccattcaagaataggtatgtaacagaatttgtaagcctaggcaatttt
tcagctcttcgaactttcagagtcttgagagctttgaaaactatttctgtaattccaggt
aagaagtatgtgacagagtttgtggacctgggtaatgtctcagcgttgagaacattcaga
gttctccgagcattgaaaacaatttcagtcattccaggcctgaagaccattgtgggagcc
ctaatccagtctgtgaagaagctctcagatgtcatgatcctgactgtgttctgtctgagc
gtgtttgctctgattgggttgcaactcttcatgggcaacctacggaataaatgtgtacag
tggcctcccaccaatgcttccctggaggagcatagtatagaaaagaatatgaccatgaat
tacaatggcacacttgtaaatgaaactgtcattgagtttgactggaaatcatatattcaa
gattcaagatatcattattttctggagggttttttagatgcattactttgtggaaatagc
tctgatgcaggccaatgtccagaaggatatatgtgtgtgaaagctggtagaaatcccaat
tatggctacacaagctttgataccttcagttgggcttttttgtcactctttcggctgatg
actcaggacttctgggaaaatctttaccaactgacattacgtgctgctggaaaaacatac
atgatattttttgtgctggtgattttcttgggctcattctatctaataaatttgatcctg
gctgtggtggccatggcctatgaggaacagaatcaggccaccttggaagaggcagaacag
aaagaggctgaatttcagcagatgcttgaacagcttaaaaaacaacaggaggcagctcag
caggcagcagctgtaactgcctcagagcattccagagaacctagtgcagcaggtgggctc
tcagacagctcatctgaagcctccaaattgagttccaagagtgctaaggaaagaagaaat
cggagaaagaaaagaaaacagaaagagcagtctggtggggaagagaaagatgaggatgaa
ttccataaatctgaatctgaagacagcattaggaggaaaggatttcgcttctccatcgaa
gggaatcgcttgacatatgaaaagaggtactcctctccacaccagtctttgttgagtatt
cgcggctccctattttctccaagacgaaatagcagaacgagccttttcagctttagaggg
agagcaaaagatgtgggttcagagaatgactttgctgatgatgagcatagcacctttgag
gataatgagagccggagagactccttgtttgtgccccgacgacatggagagcgacgcaac
agtaacctaagtcagaccagcagatcatcccggatgctggcagtttttccaacaaatggg
aagatgcatagcactgtggattgcaatggtgtggtttccttggttggtggaccttcagtt
cctacatcgcctgttggacaacttctgccagaggtgataatagataagccagctactgat
gacaatggaacaaccactgaaactgaaatgagaaaaagaagatcaagttctttccatgtt
tccatggactttctagaagatccttcccaaagacaaagagcaatgagtatagccagcatt
ttaacaaatacagtagaagaacttgaagaatccaggcagaaatgcccaccctgttggtat
aaattttccaacatattcttaatctgggactgttcaccatattggttaaaagtgaaacat
attgtcaacctggttgtgatggacccatttgttgacctggccatcaccatctgtattgtc
ttaaatactcttttcatggccatggagcactatccaatgacggatcatttcaatcatgtg
cttacagtaggaaacttggttttcactgggatctttacagcagaaatgtttctgaaaatt
attgccatggatccttactattatttccaagaaggctggaatatctttgatggttttatt
gtgacacttagcctggtagaacttggcctcgccaatgtggaaggattatcagttctccgt
tcatttcgattgctccgagttttcaagttggcaaaatcttggccaactttaaatatgcta
ataaagatcattggcaattcagtgggggctctgggaaatctaaccctggtgttggccatc
attgtcttcatttttgccgtggtcggaatgcagctctttggtaaaagctataaagattgt
gtctgcaagattgccagtgactgtaagctcccacgttggcacatgaatgacttctttcac
tccttcctgattgtgttccgtgtgctgtgtggagagtggatagagaccatgtgggactgt
atggaggtcgctggtcaagccatgtgccttactgtcttcatgatggtcatggtgattgga
aacctggtggtcctgaacctctttctggccttgcttctgagctcatttagtgcagacaac
ctcgcagccactgatgatgataatgaaatgaacaatctccaaattgctgtggataggatg
cacaaaggaatagcttatgtgaagagaaaaatatatgaatttattcaacaatccttcgtt
aggaaacaaaagattttagatgaaattaaaccacttgatgatttaaacaataagaaagaa
agttgtatgtccaatcatacaacggaagttggtaaagatcttgactatcttaaagatgta
aatggaaccacaagtggaataggaactggcagcagtgttgaaaaatatattgtcgatgaa
agtgattacatgtcattcataaacaatcccagtcttactgtgactgtaccaattgctgta
ggagagtctgactttgaaaatttaaacacagaggacttcagtagtgaatcagatctggag
gaaagcaaagagaaacttaacgaaagcagtagctcatctgaaggcagcactgtagacatt
ggtgcacctgcagaagaacagcctgtggtggaacctgaagaaacccttgaacctgaagcc
tgtttcactgaaggctgtgtacaaagattcaaatgttgtcaaatcagtgtggaagaaggg
agaggaaaacagtggtggaacctgagaagaacatgttttcaaatagttgaacataactgg
tttgagaccttcattgttttcatgattctcctcagtagtggtgctctggcatttgaagat
atatatattgatcagcgaaagacaattaagacaatgttggaatatgccgataaagttttc
acttacatttttattttggaaatgcttctaaaatgggtggcatatggctatcaaacttac
ttcaccaatgcctggtgttggttggacttcttaattgtcgatgtttctttggtcagttta
acagcaaatgccttaggttactcagaacttggtgccatcaaatctctcaggacactaaga
gctctgagacctctaagagccttatcacgatttgaagggatgagggtggttgtgaatgcc
cttttaggagcaattccatccatcatgaatgtgcttctggtttgtcttatattttggcta
attttcagcatcatgggcgtaaatttgtttgctggcaaattctaccactgtattaacacc
acaaatggtgaaatgtttgaaatcgacgatgtgaataatcattctgattgcctaaaccta
atagaaagaaatgaaactgctcgatggaaaaatgtgaaagtaaattttgataatgtagga
tttgggtatctctctttgcttcaagttgccacatttaagggatggatggatataatgtat
gcagcagttgattctagaaatgtggaacttcaacctaagtatgaggaaaatctatatatg
tatctttactttgtcattttcatcatctttggatccttcttcaccttgaacctgtttatt
ggtgtcatcatagataatttcaaccagcaaaaaaagaagtttggaggtcaagacatcttt
atgacagaagaacagaagaaatattataatgcaatgaaaaaattaggatcgaaaaagcca
caaaagcctatacctcgaccaggaaacaaatttcaaggaatggtctttgactttgtaacc
agacaagtttttgacatcagcatcatgattcttatctgtctcaacatggtcacaatgatg
gtagaaacagatgaccagagtgaatatgtaactaccattttgtcacgcatcaacttggtg
ttcattgtgcttttcactggagagtgtgtgctgaagctcatctccctccgccattattat
tttaccataggctggaatatttttgattttgtggttgtcattctctccattgtaggcatg
tttctggctgagctgatagaaaaatactttgtgtcccctaccttgttccgcgtgatccgt
cttgccaggatcggccgaatcctacgtctgatcaaaggggcaaaagggatccgcacactg
ctctttgccctgatgatgtcccttcccgccttgtttaacatcggcctcctgctcttcctg
gtcatgttcatctacgccatctttggaatgtcgaactttgcctatgttaagagggaagtt
ggaattgatgacatgttcaactttgaaacttttggcaacagcatgatctgcctgttccag
attaccacctctgctggctgggatggtttgctagcacctattcttaatagtggaccacct
gactgtgaccctaaaaaagacaaccctggaagctcagttaaaggagactgtgggaaccca
tctgttgggattttcttttttgtcagttacatcatcatatcatttctggttgtggtgaac
atgtacattgctgtcatcctggagaacttcagtgttgctactgaagaaagtgcagagccc
ctgagcgaggatgacttcgagatgttctatgaggtttgggagaagtttgatcctgatgca
actcagttcatggaatttgaaaaactgtctcagtttgcagctgctcttgaacctcctctc
aatttgccacaaccaaacaaactgcagctcattgccatggatttgcccatggtaagtggt
gaccggatccactgtcttgacatcctgtttgcttttactaaacgggttctgggggaaagt
ggagagatggatgctctccgaatacagatggaagagcgattcatggcttccaatccatca
aaggtctcctatcagccaattactacgactttaaaacgaaaacaagaggaggtgtctgct
gttattattcagcgtgcttataggcgccacctcttaaagcgaactgtaaaacaagcttca
tttatgtataataaaaataaaatcaaaggtgggactaatcttcttataaaagaagacatg
ttaattgacagaataaatgaaaactctattacagaaaaaactgatctgaccatgtccaca
gcagcttgtccaccctcctatgatcgggtaacaaagccaattgtggaaaaacatgagcaa
gaaggcaaagatgaaaaagccaaagggaaataa
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integrated database retrieval system
