Pteropus vampyrus (large flying fox): 105294976
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Entry
105294976 CDS
T07815
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pvp
Pteropus vampyrus (large flying fox)
Pathway
pvp03008
Ribosome biogenesis in eukaryotes
pvp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105294976 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
105294976 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvp03019
]
105294976 (XRN1)
03009 Ribosome biogenesis [BR:
pvp03009
]
105294976 (XRN1)
03016 Transfer RNA biogenesis [BR:
pvp03016
]
105294976 (XRN1)
03036 Chromosome and associated proteins [BR:
pvp03036
]
105294976 (XRN1)
Messenger RNA biogenesis [BR:
pvp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105294976 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
105294976 (XRN1)
Ribosome biogenesis [BR:
pvp03009
]
Eukaryotic type
Pre-60S particles
RNases
105294976 (XRN1)
Transfer RNA biogenesis [BR:
pvp03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
105294976 (XRN1)
Chromosome and associated proteins [BR:
pvp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105294976 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
105294976
NCBI-ProteinID:
XP_011362756
UniProt:
A0A6P3QCM7
LinkDB
All DBs
Position
Unknown
AA seq
1692 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAVEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNLKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEVQFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKDKITFQYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKNYKEKKKSKSQENSICWAALDKNAQVVTSKDNLEDETE
DDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWYY
PYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTREDSPI
IEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKTEERKRNQHSECLMC
WYDRGTEFTYPSPWPEKFPAIARCCTRYKIISLDAWRVDISKNKITRVDQKAFYFCGFPT
LKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVGAESAELSIENVASSVLGKSVFVNWPH
LEEARVVGISDGETKFYLEEPPGTQKLYLGRTAPPCKVVLLGDKEQSNWIKEVQGISEYY
LRRKGIIINETSAVVYAQLLTGHKYQINQNGEVRLEKQWSKQVLPFVYQTIVKDIRAFDS
RFSSIKTLDDLFPPRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDALI
QNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNK
KNEEVPGYTKKVGNEWMYSSAAEQLLAEYLERAPELFCYIAKNSQEDVFYEDDIWPGENE
NGAEKVQEIITWLRGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTVK
PHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLFE
VLFDEEFPGGLTIRCSPGRGYRLPTSALVNLTHGSRSETGNQKLTAIVKPQPVVNHCSSS
LSISSGHLGGLNHSPQSLFIPTQVPTKNDDEFCNIWQSLQGSGRVRHFQPTLQEKGAGLP
QEISQVTQHHKSGLNDNIKCQQRKHEPHSKFKEECKSPKTESRSQKISNKQPNTGIENFL
ASLNISKENEVQSSHHEEPPSEEHLSPQSFAMKGTRMLKEILKIDGSDCVGRKNEMKQID
NKVTVSSNRRDESGHSSQPKQNKKPTSYMNKPHSASEYHNVQSMENVCWPAPSQLPPVST
PVTELSRICSLVGMPQPDFSFLRTPQTMTVCQVKLSNGLMVHGPQCHSENEAKEKAALFA
LQQLGSLGMNFPLPPPIFPSYPPAIPPGTIRPVFPQPTANIMPSSSHLFGSMPWGPPVPA
PGKPFHHSSYSGTMPMAGGMAGGVHNQFIPLQVTKKRVANKKNFENKEAQSSQASPLQTS
QPGSSDVTKVIPQESSSVSLKSSQITHPAPSFQVEASSQGHSMSHHKSTPSSSSRRKSRK
LAVNFGVSKPSE
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatttcagagcgatatccgtgcctcagcgaagtg
gtgaaagagcatcagattcctgaatttgacaacttgtacctggatatgaatggaattata
catcagtgttcccatcctaatgatgatgatgttcacttcagaatttcagatgataaaatc
tttactgatatttttcactacttggaggtgttgtttcgcattattaaacctaggaaggtg
ttctttatggctgttgatggtgtggctcctcgagcaaaaatgaaccagcagcgtggaagg
cggtttaggtcagcaaaggaagcagaagacaaaataaaaaaggcagtagaaaaaggagaa
actcttcctacagaggccagatttgattccaactgtattacaccagggactgaattcatg
gccaggttacatgaacatctgaagtattttgtaaatttgaaaatttctacggacaaatcc
tggcaaggagttaccatctacttctcaggccatgagactcctggagaaggagagcataaa
atcatggagtttatcagatccgagaaagcaaagccagatcatgatccgaacaccagacac
tgtctttatggtttagatgctgatttgattatgcttgggttaacaagtcacgaggtacag
ttctcacttttaagagaagaagttcggtttggtggcaaaaagacacaaagagtatgcgca
ccagaagaaaccacatttcacctcctacacttgtctttaatgagagaatatattgactat
gaattttcagtattaaaagacaagatcacatttcaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaccatcctgccagaa
cttgggggttatattaatgaaagtggccacctcaacttacctcgttttgagaaatatctt
gtaaaattatcagatttcgatcgggagcacttcagtgaagtttttgtggaccttaagtgg
tttgaaagcaaagttggtaataagtacctcaatgaagcagcaggtgttgcagcagaagaa
gccaagaactacaaggaaaagaaaaaatcaaagagccaggaaaactccatatgttgggct
gcattagataaaaatgcacaagtggtaacttctaaggacaatttagaagatgagactgaa
gatgacgacctatttgaaaccgagtttagacaatataaaagaacatattacatgacgaag
atgggagttgacgtagtgtctgatgactttctggctgatcaagctgcatgttatgttcag
gcaatacagtggattttgcactattactatcatggagttcagtcctggagctggtattat
ccttaccattatgcacctttcctatctgatattcgcaacatcagtacacttaaaatccat
tttgaactaggaaaaccttttaagccatttgaacagcttcttgccgtacttccagcagca
agcaaaaatttgcttcctacgtgctaccagcatttgatgaccagagaggactcaccaatt
atagaatattatccacctgattttaaaactgacctaaatgggaaacaacaggaatgggaa
gctgtggtactaataccttttattgatgagaagcgattgttggaagccatggagacatgt
aaccactccctcaaaacagaagagaggaaaagaaatcaacatagtgaatgcttaatgtgc
tggtatgatagaggcacagaatttacctacccctctccatggccagaaaagttccctgcc
atagcacgatgttgcacaaggtataaaataatatcattagatgcttggcgtgtagacata
agcaagaacaaaataaccagagttgaccagaaggcattctatttctgtggatttcctact
ctgaaacacatcaaacacaaattttttttgaagaaaagtggggttcaagtattccaacag
agtagccgcggggaaaacatgatgttggagatcttagtcggtgcagagtcagctgagctg
agcatagaaaatgtagcttcatcagtgcttggaaagtctgtctttgttaattggcctcat
cttgaagaagctagagttgttggtatatccgatggagaaaccaagttttacttggaagaa
cctccaggaacacagaagctgtatctgggaagaactgctcctccatgtaaagtggtcctt
cttggagacaaagaacaatctaactggataaaagaagtacaaggaatttcagaatattac
ctgagaagaaaaggaataataataaatgaaacatctgcagtcgtatatgctcagttactc
acaggtcataaatatcaaataaatcaaaatggcgaagttcgtctagagaaacagtggtca
aaacaggttcttccttttgtttatcaaactattgtcaaggacatccgagcttttgactcc
cgtttctccagtatcaaaacattggatgacttgtttcctcctagaagtatggtctttatg
ctgggaaccccctattatggctgtactggagaagttcaagattcaggtgatgtgattaca
gaaggtaggattcgtgtgattttcagcattccatgtgaacctaatcttgatgctttaata
cagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgcctt
ggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagaggatct
aggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaagttcaacaaa
aaaaatgaggaggtacctggatatactaagaaagttggaaatgagtggatgtattcatct
gcagcagaacaacttcttgcagagtacttagagagagctccagaactattttgttatata
gccaaaaatagccaagaggatgtgttctatgaagatgacatctggcctggagaaaatgag
aatggtgctgagaaagttcaagaaattattacttggctaaggggacatcctgtcagtact
ttgtctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaaattgag
gaagaagttgaaaaatgcaagcaaagaaagaataataagaaggtgcgagtgacagtgaag
ccccatttgctgtacagacctttagaacagcagcatggagtcattcctgatcgggatgca
gaatttcgtctatttgatcgtgttgtaaacgtgagagagaacttttcagttccagttggc
cttcggggcaccatcataggaattaaaggggctaatagagaagctgatgtactatttgaa
gtattatttgatgaagaatttcctggaggcttaacaataaggtgctctcctggtaggggt
tatcgactgccaacaagtgccttggtgaaccttactcatgggagtcgctctgaaactgga
aatcagaagttgacagccattgtgaaaccgcagccagttgtgaatcactgtagctcaagt
ttatcaatttcatctgggcatttgggaggcctgaaccattcccctcaatcgctttttatt
cctacacaagtacctactaaaaatgatgatgaattttgcaacatttggcagtccttacag
ggatctggaagggttcgacactttcagccaactctacaagagaagggtgcaggcctacct
caagaaataagtcaagtaactcaacatcataaatctggcttaaatgacaatattaaatgt
cagcagagaaaacatgagcctcacagtaaatttaaagaagagtgtaagagtcctaaaact
gagagtcggtcacaaaaaatttcaaataagcagcctaacactggaattgagaacttttta
gcatccttgaatatctccaaagaaaatgaagtacagtcatctcatcatgaagagcctcca
agtgaagaacatttgtcaccacagtcatttgctatgaagggaacacggatgcttaaagaa
attttaaaaattgatggttctgactgtgtgggccgtaagaatgaaatgaaacagatcgat
aataaagtcaccgtttcctctaatagaagagatgaatctggacattcctcacagcctaaa
caaaataagaaaccaacatcttatatgaacaagcctcacagtgctagtgagtaccataat
gtgcagtctatggaaaatgtgtgttggcctgctcccagccagctccctcctgtgtccaca
ccagtaactgaactttctcgaatttgttcccttgttggaatgccacaaccagatttctct
tttcttagaacaccgcagacaatgacagtttgccaagtgaaattatctaatggcttaatg
gtacatgggccacagtgccattctgaaaatgaagccaaggaaaaagctgcactttttgct
ttacaacaattgggctccttaggaatgaatttccctttgcctccaccaatatttccaagt
tatcctcctgctataccacctggaaccattcgtccagtttttccccaacctactgctaat
ataatgccatcatcatctcatctctttggttcaatgccatggggaccaccagtgccagct
cctggaaagccctttcatcatagttcatattccgggaccatgcccatggctgggggaatg
gcaggtggtgtgcacaatcagttcatacctctacaggttactaaaaaaagagttgcaaac
aaaaagaacttcgagaataaggaggctcagagttcacaagccagtccacttcagactagc
cagccagggtcttctgatgtcaccaaagtgattccacaggagagttcatcagtttccttg
aagtcctctcagattactcatccagcaccttcttttcaagttgaagcttcctcccaaggc
catagtatgtctcaccataagtcaacaccaagctcttcttcaagaagaaaatcaagaaaa
ctggctgtcaattttggcgtttctaaaccttctgaataa
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integrated database retrieval system
