Pteropus vampyrus (large flying fox): 105296581
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Entry
105296581 CDS
T07815
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pvp
Pteropus vampyrus (large flying fox)
Pathway
pvp03013
Nucleocytoplasmic transport
pvp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105296581 (UPF1)
03015 mRNA surveillance pathway
105296581 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvp03019
]
105296581 (UPF1)
Enzymes [BR:
pvp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105296581 (UPF1)
5.6.2.5 RNA 5'-3' helicase
105296581 (UPF1)
Messenger RNA biogenesis [BR:
pvp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105296581 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
105296581 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
105296581
NCBI-ProteinID:
XP_011365050
UniProt:
A0A6P3QHN7
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPG
GPVGAGAGVAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAAERVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcactttcctggacaccgaggag
acggagctgctcggcgcagacacgcagggctccgagtttgagttcaccgacttcactctc
cccagccagacgcagacgccccccggcggccccggcggtcctgggggtggcggcccgggg
ggcccggtcggtgcaggcgcaggagttgcggccggacagctcgacgcgcaggtcggagga
cctgaaggcatcctgcagaatggggccgtggatgacagtgtggccaagaccagccagttg
ttggccgagttgaacttcgaagaagatgaagaggatacttattacacaaaggacctccca
gtacatgcctgcagttactgtggaatacacgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaacggacgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactttgcacaaagatgggcccctgggggagacg
gtcctggagtgttacaattgtggctgccgcaacgtcttcctccttggcttcatccctgct
aaggctgactcggtggtagtgctgctgtgcaggcagccttgtgccagtcagagcagcctc
aaggacatcaactgggacagctcgcaatggcagcccctgatccaggaccgctgcttcctg
tcttggctggtcaagatcccttcagagcaggagcagctgcgggctcggcaaataaccgct
cagcagatcaacaaactagaggagttgtggaaggagaatccttctgccaccttggaggac
ctagagaagccgggggtggatgaggagccgcagcatgtcctcttgcggtatgaggatgcc
taccagtaccagaacatattcgggcctctggtcaagctggaggccgactatgacaagaag
ctcaaagagtcccagactcaagataacatcacagtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagatatgcggctcatgcagggtgatgagatatgcctgcgatacaaaggg
gacctagcacccctgtggaaagggatcggccatgtcatcaaggtccctgataattacggt
gatgagattgccattgagctgcggagcagtgtgggtgcacctgtggaggtgacgcataac
ttccaggtggactttgtgtggaaatccacctcgtttgacaggatgcagagtgcactgaag
acctttgctgtggatgagacctccgtgtcaggttatatctaccacaagctactcggccac
gaagtggaggacgtgatcatcaagtgccagctacccaagcgcttcacagcacaggggctc
cctgacctcaaccactctcaggtttatgctgtaaagactgtgctgcagagacctctaagc
ctgatccagggaccaccaggcacggggaagacagtaacctcagccaccatcgtctaccat
ctggcacggcagggcaatgggcccgtgcttgtctgtgctccaagtaacatagctgtggat
cagctgacggagaagatccaccaaactgggctgaaagttgtgcggctctgcgccaagagc
cgcgaggccatcgactccccggtgtcattcctagccctgcataaccagatccggaacatg
gatagcatgccagagctgcagaagctgcagcagctgaaggatgagactggggagctgtca
tctgctgatgagaagcggtaccgagccctgaagcgcacggccgaaagggagctgctcatg
aatgcggatgtcatctgctgtacgtgtgtgggtgcaggggaccccaggcttgccaagatg
cagttccgctccattttaattgatgagagcacccaagccaccgagccagagtgcatggtc
cctgtggtcctcggagccaagcagctgatccttgtgggtgaccactgccagctcggcccc
gtggtgatgtgcaagaaggcggccaaggccgggctgtctcagtcgctgttcgaacgcctc
gtggtgctgggcatccgtccgatccgcttgcaagtccagtatcggatgcaccctgcgctc
agcgcttttccgtccaacatcttctatgagggttctctgcagaatggcgtcacagcagcg
gaacgtgtaaagaaagggtttgacttccagtggccccaacctgataagccgatgttcttc
tatgtgacccagggccaggaagagatcgctagttcgggtacctcctacctgaacaggacg
gaggctgcaaacgtggagaagatcaccacgaagctgctaaaggcaggtgccaagccagac
cagattggcatcatcacgccctatgaggggcagcgctcctacttggtgcagtatatgcag
ttcagtggctccctgcacaccaagctctaccaggaggtggagattgccagtgtggatgcg
ttccaggggcgcgagaaggacttcatcatcctctcctgcgtgcgggccaatgagcaccaa
ggcattgggtttttaaacgaccccagacggcttaatgtggccctaacccgagcgcgatac
ggggtcatcattgtggggaaccccaaggccctatccaagcagccactctggaaccacctg
ctgaattactacaaggagcagaaggtgctggtggaggggcccctgaacaacctgcgagag
agcctaatgcaattcagcaagccccggaagctggtcaacaccatcaaccctggagctcgc
ttcatgaccacagccatgtatgacgcccgggaggccatcatcccaggatcagtttatgat
cggagcagccagggtcggccctcgaacatgtacttccagacccatgaccagctcggcatg
atcagtgctggccccagccacgtggctgccatgaacattcccatccccttcaacctggtc
atgccacccatgccacccccggggtattttggacaggctaacgggccagctgcaggccgg
ggcaccccaaaaggcaaaacgggtcgtggcggacgccagaagaaccgctttgggcttcct
gggcccagccagacaaacctgcccagcagccaggccagccaggatgtggcatcacagccc
ttctcacagggtgccctgacgcagggctatatctccatgagccagccctcccagatgagc
cagcctggcctctcccaacctgagctgtcccaggacagttaccttggtgatgagtttaag
tcccagattgatgtggcgctgtcacaagactccacataccagggagagcgggcataccag
cacggcggagtgacgggcctgtcccagtactag
DBGET
integrated database retrieval system
