Pteropus vampyrus (large flying fox): 105300772
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Entry
105300772 CDS
T07815
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pvp
Pteropus vampyrus (large flying fox)
Pathway
pvp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105300772 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvp03021
]
105300772 (PCF11)
03019 Messenger RNA biogenesis [BR:
pvp03019
]
105300772 (PCF11)
Transcription machinery [BR:
pvp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105300772 (PCF11)
Messenger RNA biogenesis [BR:
pvp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105300772 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
105300772
NCBI-ProteinID:
XP_011371434
UniProt:
A0A6P3QW85
LinkDB
All DBs
Position
Unknown
AA seq
1685 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMVVKAPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQGHRKEFLMNTLNQSDIKTSKTIPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESTRVSDMSKRDPRLKKHLQDKTDSKDDDI
KEKRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTITEEPEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLTPKAGKIRQSGVKQSHMEEFTPPSR
EERNAKRSTKQDIRDPRRIKKTEEERPQETASQHSMKSGTEPKENVENWQSSKSTKRWKS
GWEESKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDTDKPFVDGPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMI
FEGPNKLSPRIDGPPTPGSLRFDGSSGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNHLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPVPGGGMRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPG
PQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGARFDNHPSQRLDSVSFNQ
TGPFNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFD
EKNLQSSQFGNFGNLPAPITVGNIQASQQVLTGVAQPVPFGQGQQFLPVHPQNPGAFVQN
PSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPSPEEEEDQN
EDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNR
TEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQ
SVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDC
TPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQIDTPPACTEESIATPTEIKTEND
TVESV
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggacgagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaagttacgttct
acatgggatgaaatattcccattgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctaccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcccgaagagccttcaacacctggtacagtggtc
agttctcctagcatctccactcctccaattgttcctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgaactagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacctaggtcctggatctgcaccatccaaattacatgtttcacaa
attccccctatggtagttaaagctccccatcaggttcctgtgcaacctgagaagagccgg
ccaggtccatccttacaaattcaagatttgaaaggaactaaccgcgatccccgtcttaat
aggatgagtcaacattcttctcatggaaaagatcaaggtcacagaaaagaatttctaatg
aacacattgaaccaatctgatattaagacaagtaaaactataccctctgaaaaactaaat
tcatccaaacaagaaaaaagtaaatcaggtgaaaaaataaccaagaaggaacttgaccaa
ttagattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaagacttgaaaaatcaggaatctgaaagcacacgggtgtccgatatgagcaag
agagatccaagattaaaaaaacatcttcaggataagactgatagcaaagatgatgatata
aaggagaagagaaaaactgcagaaaaaaaggataaagatgaacatatgaaatcatctgaa
cacagactggttggaagtagaaataaaatcattaatggcattgtacaaaaacaggatact
ataacggaagaaccggaaaaacagggcacaaaaccagggagatctagtactagaaagcga
tcaagatcacgatcacccaagtctcggtcaccaattattcattctccaaagagaagagat
aggcggtcacccaaacgaaggcaaaggagtatgtctccaaccttgacacccaaagctggg
aagattcgccaatcaggagttaagcagtcacatatggaagaatttacgccaccttccagg
gaagaaagaaatgctaagagaagtactaaacaggatattcgagatccaaggcgaataaaa
aagactgaagaggagcgaccacaagaaactgcaagtcagcattcaatgaaatcaggcact
gaaccaaaggagaatgtagaaaattggcaaagttccaagtctaccaagagatggaaatct
ggttgggaagaaagtaaaagcttacaacagggtgatgaacatagtaaatctcctcatcta
aggcatagggaaagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aagagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaagagcagagatcaccattcaatgat
cgttttccacttaagcgacctagatatgaagatacagataaaccatttgtagatggtcca
gcatcacgattcgcgggcctcgatacaaatcagcgacttacagctttagctgaagataga
ccattatttgatggacctagtaggccatcagtaacaagagatggcccaaccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggttcgatgggtcatctggacaaatgggaggaggtggccctttaagatttgaaggacca
caaggtcagctaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtaggg
acacctctgcggtttgaggggccaattggtcaagcaggaggaggaggttttcggtttgaa
ggttctcctggtctgaggtttgagggctctgcaggtggtctacgatttgaaggaccaggg
gggcagcctgtgggtggtctcaggtttgagggacatcgaggtcaacctgtgggtggtcta
aggtttgagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggt
cagcctgtaggtggacttagatttgaggggggtcatggcccatcaggggctgcaattagg
tttgatggacctcatggtcagccagcaggtgggatcagatttgagggccctttgctacag
cagggagttggaatgaggtttgagggcccccatggtcagtcagtagctggtctgaggttt
gaagggcaacataatcatcttggtgggaaccttaggtttgagggtccacatggtcaacca
ggggttgggattaggtttgaaggaccattagtccaacaaggaggtggaatgagatttgag
ggtcctgtaccaggaggtggcatgagaattgaagggcctctgggtcaaggtggtccaaga
tttgaaggttgtcatgctttaaggtttgatgggcagccaggtcagccatcgctcttgcca
agatttgatggattacatggtcagccaggtcctaggtttgaaagaactggtcagccagga
ccacagaggtttgatggaccacctggacagcaggttcaaccaagatttgatggtgtgcct
caaagatttgatggtccacaacaccagcaagcttcaaggtttgatatccctcttggcctt
caaggcgcacgatttgacaatcatccttcacaaaggcttgactcagtttctttcaatcag
actggtccatttaatgatccacctggcaatgcttttaatgccccatcccaaggactgcag
ttccaaagacatgaacaaatatttgattcacctcaaggaccaaattttaatggaccacat
ggccctggaaaccagagtttctcaaatccccttaacagagcttctggacactattttgat
gaaaagaatcttcagagttctcagtttggaaactttggcaatttacctgctccaataaca
gtaggaaatattcaggcatctcaacaggttctgactggtgttgctcagccagtaccattt
ggccaaggacaacaatttttaccagttcatccacaaaatccaggagcatttgttcagaat
ccttcaggagcccttcctaaggcatatcctgataatcatctcagtcaggtggatgtaaat
gaattattttcaaaactgctaaaaacaggaattcttaaattgtcccagcctgattcagct
acaacacaagtaaatgaagttgctgctcagccttcccctgaagaggaggaggatcaaaat
gaagatcaagatgttccagatcttaccaattttacaattgaagaattgaaacaacgttat
gatagtgttataaatcgactttacactggtattcagtgttactcttgtggaatgaggttt
acaacatcacagactgatgtatacgcagatcacttggactggcattatcggcaaaataga
actgaaaaagacgttagcagaaaagtcactcatagacgctggtactacagtttaacagac
tggatagaatttgaggaaatagctgatctggaagaacgtgcaaaaagccagttttttgaa
aaggtgcatgaagaagttgtgctcaaaactcaggaggctgctaaagaaaaggagttccaa
agtgtacctgcggggcctgctggagcagttgaaagttgtgaaatctgtcaagaacaattt
gaacaatactgggatgaagaagaggaagaatggcatttaaaaaatgctattagagtagat
ggaaagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgt
acaccatctcccagcaagacaccagttgaaaaccccttgaacattatgttgaacattgtc
aaaaacgaattgcaggaaccctgtgaaagtcctaaagttaaggaagaacaaattgatact
ccaccagcttgtacagaggaaagcatagcaacgcccactgaaattaaaacagaaaatgat
acagtcgagtcagtttaa
DBGET
integrated database retrieval system
