Pseudomonas veronii: PverR02_23130
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Entry
PverR02_23130 CDS
T04853
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pvr
Pseudomonas veronii
Brite
KEGG Orthology (KO) [BR:
pvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvr03019
]
PverR02_23130
Enzymes [BR:
pvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PverR02_23130
Messenger RNA biogenesis [BR:
pvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PverR02_23130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
NACHT
AAA_25
T2SSE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AQY67815
LinkDB
All DBs
Position
complement(5105840..5109751)
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDQAPAIDQLLKNLDHAMLADRHRLRRQLLELRKKPDEEKLAQWVTRMQASCAQVTARR
ASLPLIRYDDSLPIAAKRDEIKAALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQYGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICIRLYS
EEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEISDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDADSDFAGLVNLWRGFEEQRQELTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLTVNKDPADFAKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
IGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREGLVRGEIQSRAKCLIANQQLLEQLDEL
EAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYKVNSQKDPQLLIMREEDVLARD
ASEVTAAHYPDTLHLGDLALALSYHFEPNHPRDGVTLRVPAPLLPALPAERLEWLVPGVI
EAKCIALVRNLPKALRKNFVPVPDFVRAALQRIEFAQGSLPQALGRELLRMTGARVSDEA
WAEAAQQVESHLKMNLEVVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVE
AKVFAAVAEKTQQKIAGLSMTVYPALVEENGTVKEGRFSTAAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGLTELGLMYRELGRIEALVEDILLASLDSCVLEGEASLPRDGAGLAAL
AERKRGGWTEHAERLARLTLDVLKLWHGLQKRFKGKIDLAQAVALNDIKLQLSNLVYPGF
VRETPAQWFKELPRFLKAIELRLEKLPSQVQKDRVWSGELAGLWAQYQNRLNKHAQEGKH
DPQLALYRWWLEEYRVSLFAQQLGTRVPISDKRLSKQWSLVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccaagcgcccgctatcgaccaactgctgaaaaacctcgatcacgccatgctc
gccgaccgccaccgtttgcggcggcagttgctcgagctgcgcaagaagcccgatgaggag
aagctggcgcagtgggtgacgcgcatgcaggcgtcctgcgcccaggtcacggcgcggcgc
gccagcctgccgctgatccgctacgacgacagcctgccgatcgccgccaagcgcgacgaa
atcaaggcggcgttgctcaagcatcaggtgctgatcatcgccggcgagaccggttcgggt
aagaccacccagttgccgaaaatctgcctggagatcggtcgcggccaatacggcctgatc
ggccacacccagccgcgtcggatcgcagcgcgcagcgtcgccagccgggttgccgaagag
ttggccacgccgctcggcgcactggtcggttatcaggtgcgcttcgaagaccagagtgat
tccaacaccctgatcaagctgatgaccgacggcatcctgctggcggaaacccagaacgac
cgctacctcgaacgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctgaac
atcgacttcctgctcggctacctgaaaaccctgttgccgcgtcgcccggacctgaaagtc
atcatcacctcggccaccatcgacctggagcgcttctccaagcatttcgacgatgcgccg
attgtcgaagtgtcgggccgcaccttcccggtggacacctggtatcgcccgctgaccctg
gaacaggacgaggagggcaaccgcgtcgaggacgacttgaccgtcgaccaggcgatcctc
gccaccctcgatgaaatcgccgcctacgagcgcagcgagcggcgcagccctggcgacgtg
ctggtgttcctgccgggcgagcgcgagattcgcgatgccgccgacatgctgcgcaaggcc
cagctcaagcacaccgagattttgccgctgtatgcgcgcctgtcaccggccgaacagcag
cgcattttccagtcccacccgggccggcgcgtggtgctggcgaccaacgtcgccgaaacc
tcgctgaccgtgccgggcattcgttatgtgatcgacagcggcaccgcgcgcatcagccgc
tacagctaccgcgccaaggtgcagcgtctgcccatcgaggcgatctcccaggccagcgcc
aaccagcgtaaaggccgctgcggccgggtcgagccggggatttgcatccggctgtacagc
gaagaagactttatcggccgtccggaatttaccgacccggagatcctgcgcaccaacctg
gcggctgtgatcctgcagatgctgcacctgcgcctgggcgaaatcagcgacttcccgttt
atcgaaccgccggacggcaaggccatcagcgatggtttcaacctgctgcaagaactgtcg
gcggtcgaccgcaacagccaactgaccccgctgggccgccagttggcgcgcctgccggtg
gacccgcgcatgggccgcatgctgctcgaagccgccaagctgggcagcctgcaggaagtg
ctgatcgtggccagcgccatgtcgatccaggacccgcgcgagcgcccgccggaacgccaa
caggccgccgaccaggcccacgcacaatggaaggacgccgattcggacttcgccgggctg
gtcaatctgtggcgtggctttgaagagcagcgccaggaactgaccgccagcccgctgcgc
aactggtgtcgcaagaacttcctcaactacctgcgcctgcgcgagtggcgcgattcccat
cgccagttgagcctgatctgccgcgacatgcagctgaccgtcaacaaggacccggccgac
ttcgcgaaactgcacaaagccgtactgtcgggcctgctcagtcagatcgggcagaaaacc
gaagacggcgattacctcggtgcgcgtcagcggcgcttctggattcacccgtcgtcgggc
atcggcaagaaacgtccgcagtggctgatgaccgccgagctggtcgaaaccaccaagctg
tacgcacgcatggtggcgaagatcgatgccgactggatcgaaccgctggccgggcacctg
atcaagaaaaaccacttcgaaccgcattgggagaagaagcgcggccaagtggtggcgttc
gagcagatcaccctgttcgggctgatcgtggtcgggcgccggccggtgcattacgggccg
gtcgacccagtggtgtcgcgcgagttgtttatccgcgaaggcctggtgcgcggcgagatt
cagtcccgggccaagtgcctgatcgccaaccagcaactgctggagcagctcgacgagctg
gaagccaaggcgcgtcggcgcgacatcctggccgacgaagagacgctgtacgcgttctac
gatgcgcgcttgccggcggagatccaccagaccgcgacgttcgacagctggtacaaggtc
aacagccagaaagacccgcaattgctgatcatgcgcgaggaagacgtgctggcccgcgac
gccagcgaagtcaccgccgcgcattacccggacaccctgcacctgggcgatctggcgctg
gccttgagttaccacttcgaacccaaccacccgcgtgacggcgtgaccttgcgcgtgccg
gcgccgctgttgccggccttgcccgccgaacgcctggaatggctggtgccgggggtgatc
gaagccaagtgcatcgccctggtgcgcaacctgcccaaggccctgcgcaagaatttcgtg
ccggtgccggacttcgtcagggccgccctgcaacgtatcgaattcgcccagggctcgctg
ccccaggcgctggggcgcgaactgctgcgcatgaccggcgcgcgcgtcagcgatgaagcc
tgggccgaggccgcgcagcaggtggaaagccacctgaagatgaacctggaagtggtcgac
ggccagggcaagtttctcggcgaaggccgcgacctggccgaactgaccgcgcgctttgcc
gaggccagccaggccgcgttggccgtgccgcagacggcaaaaagccaacagccggtggaa
gccaaggtgttcgcggcggtggccgagaagacccagcaaaagatcgccgggctgtcgatg
acggtgtacccggcgctggtggaagaaaacggcacggtcaaggaaggacgtttctccacc
gccgccgaggccgagttccagcaccgtcgcgccttgcagcgcctgctgatgcagcaattg
gccgaaccggcaaaattcctgcgcggcaaattgcccggcctgaccgagctgggcctgatg
taccgcgaactggggcgcatcgaggcgctggtggaagatattttgctggccagcctcgac
agctgcgtgctggaaggcgaagccagcctgccgcgtgacggcgccgggctggcggcgctg
gccgagcgcaagcgtggcggctggaccgaacacgccgagcgcctggcgcgcttgaccctg
gacgtattgaaactctggcacggcctgcaaaagcgcttcaaaggcaagatcgacctggcc
caggcggtggccttgaacgatatcaagctgcaactgagcaatctggtttatcccggcttt
gtgcgcgaaactccggcgcagtggttcaaggagttgccgcgtttcctcaaggcgatcgag
ctgcgtctggaaaaactgcccagccaggtgcaaaaagatcgggtgtggagcggcgagctg
gcgggcctgtgggcgcagtaccagaaccgtttgaacaagcatgcccaggaaggcaagcac
gacccccagctagcgctctatcgctggtggttggaggaatatcgggtgtcgttgtttgcc
cagcagttgggcacccgggtgccgatttccgacaagcgcctgagcaagcaatggagcctg
gtcgaagcgtaa
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