Pseudomonas veronii: PverR02_23945
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Entry
PverR02_23945 CDS
T04853
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pvr
Pseudomonas veronii
Pathway
pvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PverR02_23945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvr03019
]
PverR02_23945
03009 Ribosome biogenesis [BR:
pvr03009
]
PverR02_23945
Enzymes [BR:
pvr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PverR02_23945
Messenger RNA biogenesis [BR:
pvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PverR02_23945
Ribosome biogenesis [BR:
pvr03009
]
Prokaryotic type
rRNA processing factors
PverR02_23945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AQY67972
LinkDB
All DBs
Position
5279318..5282527
Genome browser
AA seq
1069 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPV
EVAAPVAAPAALPEPSLFKGLVKSLVSLFASKEEPAAPVVVEKPATERPARNEERRNGRQ
QSRNRNGRRDEERKPREERAPREERAPREERAPREAREETPVVAREERAPREERAPRPPR
APREDRKPRGEREERVRELREPLDAAPAVAVAAAAVAATTEEERPARPPREERAPREERQ
PRPPREERQPRTEQAAAASEEEVLTGEEQLQEDGQDNAEGDRPRRRSRGQRRRSNRRERQ
RDANGNVIEGSEEAGENAEAATSESTSTELAAGLAVTAAVASSVISAPAEAQAHEQAERA
TAAVEETVAVEAPVAETPVVEAPVVEATTPIEAPAAPEVEVAPVREAQPQEEVAAAEPAP
VVEPQPVVEAVVEAPVVEAAAPAVREVREEQTAFQWTAEPAAPVEAPAPVVEAASAPVAE
VVEAAPVVVAEPAPVVEAPVVAEAPAPVVEAAPASALTENGRAPNDPREVRRRRKEAEAA
AAAAAAAPAVAEVVEHAAPIVDETPRSVEEVAEHHPKALEEEHEPKPLV
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcgctggtagat
ggccaacgcctttacgacctggacatcgagtccggcgcacgcgagcagaagaaggccaac
atctataaaggccgtattactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccccgaaggccgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgaaaaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctg
gccggtcgttacctcgtactgatgccgaacaacccgcgtgccggcggcatttcccgtcgc
atcgaaggcgaagaacgcaacgaactgcgtgaagcgctgaacggcctggtcgctccagcc
gacatgggcctgatcgtccgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgccatcaaagaagcgtccctggatcgttcc
gcgccgttcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgtcgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtt
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gaactgccttccggcggctccatcgtgatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccacgaaaggtagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggctgaagaaatcgcccgccagctgcgcctgcgtgatatcggcggcctgatc
gtgatcgacttcatcgacatgacccccgccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagctgaccgtgcccgcgtgcaagtcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccgtccctgggcgagagcagcggcattgtc
tgcccgcgttgcaacggcaccggcatcatccgtgacgttgaatcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtccgcgcacaagtg
ccgatcccggttgccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgtatcgtcatcctgccgaacgatcatctcgaaacgccgcacttc
gaagtgcagcgcctgcgtgatgacagcccggaagcccacagcggccagtccagctacgaa
atcgccgctgccgctgccgaagtggaagaagtccagccagccgctgcgacccgcaccctg
gttcgccaggaagccgccgtgaagaccgctccggcgcgtgccaacgcaccggttccggtt
gaagtggctgccccggttgcagccccggccgccctgcctgagccaagcctgttcaagggc
ctggtgaaatcgctggtcagcctgttcgccagcaaggaagagcctgcggcaccggtggtg
gtcgaaaaacctgccaccgagcgtccggcgcgtaacgaagagcgtcgcaacggtcgccag
cagagccgtaaccgcaacggtcgccgtgacgaagagcgcaagccgcgcgaagaacgggcc
ccgcgtgaagagcgcgcaccccgtgaagagcgtgcgcctcgcgaagcccgtgaagagacc
ccggtcgtagcccgcgaagaacgcgcaccgcgcgaagagcgcgcaccacgcccaccacgc
gcaccgcgtgaagatcgcaagccgcgtggcgagcgtgaagaacgtgtgcgtgaactgcgc
gagccgctggacgctgcgccagccgttgccgttgccgccgctgctgttgccgccactacc
gaggaagaacgcccggctcgcccgccgcgtgaagagcgtgcgccacgtgaagagcgtcaa
ccgcgcccaccgcgtgaagaacgtcaaccacgtaccgagcaggcggctgccgccagcgaa
gaagaagtgctgaccggcgaagagcaactgcaggaagacggccaggacaacgccgaaggc
gatcgtccgcgccgccgctcccgtggccagcgtcgtcgcagcaaccgtcgcgagcgtcaa
cgtgacgccaacggcaatgtgatcgaaggttcggaagaagccggcgagaacgcagaagcc
gctaccagcgaatcaaccagcaccgaactggctgccggcctggccgttaccgccgctgtt
gccagctcggtcatcagcgcacctgccgaagcccaggctcacgagcaggctgaacgcgcc
actgccgccgtcgaagaaaccgttgcggtagaagcgccagtcgccgagaccccagtggtt
gaagcaccggtcgtagaagcaaccaccccgatcgaagcccccgcggctccggaagtggaa
gttgcgccggttcgcgaagcccagccgcaagaagaagtggctgccgccgagcctgccccg
gtggttgagccacagccagtggttgaagctgttgtagaagctccggtcgtcgaagccgcc
gccccggccgtgcgtgaagttcgcgaagaacagaccgccttccagtggactgccgaacct
gccgccccggttgaagcgcctgcccccgtggtagaagccgcatcggccccggttgccgaa
gtggttgaagccgctccggtagtggttgccgagcctgcgcccgtggttgaagcgcccgtg
gttgccgaagcccccgccccggtggttgaagccgcaccggccagcgccctgaccgaaaac
ggccgtgcgccgaacgacccacgtgaagtgcgccgtcgtcgcaaggaagccgaagcggcc
gccgctgctgccgctgccgcaccggctgtcgccgaagtggtcgagcacgctgcccctatc
gtcgacgagaccccgcgttccgttgaagaagtggcagagcaccacccaaaggccctggaa
gaagagcacgagcctaaacccctcgtctga
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