Pseudomonas veronii: PverR02_27585
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Entry
PverR02_27585 CDS
T04853
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pvr
Pseudomonas veronii
Brite
KEGG Orthology (KO) [BR:
pvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvr03019
]
PverR02_27585
Enzymes [BR:
pvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PverR02_27585
Messenger RNA biogenesis [BR:
pvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PverR02_27585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
HA2_N
AAA_30
Cas3-like_C_2
Flavi_DEAD
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AQY68649
LinkDB
All DBs
Position
complement(6046129..6048636)
Genome browser
AA seq
835 aa
AA seq
DB search
MNSLPIDDVLPALRDALANRHEAVLEAPPGAGKTTRVPLALLNEPWLAGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALDGVGL
LIFDEFHERSLDADLALALSLNGRDLFRDEQPLKILLMSATLEGERLAALLDNAPILRSE
GRMFPVQMRWGRPYQAGEFIEPRLVQTILDALHDETGSVLVFLPGQAEIRRVNQQLADVL
GDRRDVLLCPLHGELDLNAQRAAIDPAPAGKRKVVLATNIAETSLTIDGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLAAYGSAEILA
ADLAGLALQLARWGVAPAQLVWLDMPPAAAYAQAQDLLQRLGALNDDKLTAHGQKMAELP
AHPRIAHLLLRGQDLGLAATACDVAALLGERDILRGGGADLHSRLALLSGEERARGTQGG
VQRAKQLARQYRGYLRGQATQPVADPEHPRWLGALLALAYPDRVAQQRRPGGAEYRLANG
RAALFAEADSLMKQAWLVIADLGSRQGQREERIYLAADFDPALFDTVLAEQVRTVDQLDW
DEREGVLRAERQRKVGELVLSREPLSGLDENARSQALVNLVRRKGLELLPWTPELRQWQA
RVMLLRQLDTGTTSEWPDVSDSALLASLEHWLMPYLGKVSRLSHFANLDISSYLHNLLPW
PLPQRLDELAPHHLKVPSGSSVRLDYSEHPPILAVRLQELFGLADTPRIAGGRQVVKLHL
LSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARIKPRK
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgttgccgatcgatgatgttttacccgccctgcgtgacgccttggcgaatcgc
catgaagccgtgctggaagcaccgcccggcgccggtaaaaccacccgcgtacccttggcc
ttgttgaatgagccttggctggccgggcagaccatcctgatgctcgaaccccgacgcctg
gccgcgcgcgccgccgccgagcgcctggccagcgagctgggggaaaaggtcggtgaaacc
gtcggctaccgcatccgcctcgacagtaaagtggggcccaacacacgcatcgaagtggtc
accgaaggcatcctcacccgccgcctgcaggacgacccggcgctggacggcgtgggcctg
ctgatcttcgacgaattccacgaacgcagcctcgacgccgacctggcgctggccctgagc
ctgaatggccgcgacctgtttcgcgacgagcagccgctgaaaatcctgctgatgtccgcc
accctcgaaggcgagcgcctggccgcgctgctggacaacgcgccgatcctgcgcagcgaa
gggcgtatgttcccggtgcagatgcgctgggggcggccgtaccaggccggtgaattcatc
gagccgcgcctggtgcagaccatcctcgacgctttgcatgacgaaaccggcagcgtgctg
gtgttcctgcccggccaggcggagatccgccgggtcaaccagcaactggcggacgtgctc
ggtgatcgccgcgatgtgctgctctgcccgctgcatggcgaactcgacctgaacgcccag
cgtgccgccatcgacccggcacccgccggcaagcgcaaagtggtgctggccaccaacatc
gccgagaccagcctgaccatcgatggcgtgcgcgtggtgatcgacgccgggttggcgcgt
gtgccgcgtttcgaccccggcagcggcatgacccgcctcgacacccagcgcatctcccgc
gccagcgccactcagcgtgccggtcgggccgggcgcctggaaccgggcgtgtgctatcgc
ttgtggtccgaggaccagcacgaaggcctggccgcctatggcagcgcggaaattctcgcc
gccgacctcgccgggctggccttgcaactggcgcgttggggcgttgcgcccgcgcagttg
gtgtggctcgacatgccgcccgctgccgcgtatgcccaggcccaggacctgctgcaacgc
ctcggcgccttgaatgacgacaaactgaccgcccacggccagaagatggccgagctgccg
gcccatccgcgcatcgcccatctgctgctgcgcgggcaggatctggggctggcggccact
gcgtgtgatgtcgccgcgctgctgggcgagcgcgacatcctgcgcgggggcggcgcggat
ctgcacagtcgcctggcgttattgtccggtgaagaacgcgcgcggggcactcagggtggt
gttcagcgcgccaagcagttggcccggcaatatcgcggctatttgcgcggccaggcgacc
cagccggtggccgaccccgaacacccgcgttggcttggcgcgctgctggcgttggcctat
cccgaccgcgtggcccaacaacgccgccccggcggcgccgaataccgcctggccaatggc
cgcgccgccttgttcgccgaggccgatagcctgatgaaacaagcctggctggtgattgcc
gacctgggcagccgccagggccagcgcgaagaacgcatctacctggcggcggattttgat
ccggcgctgttcgacacggtcctcgccgaacaagtacgcaccgtcgaccaattggattgg
gacgagcgcgaaggcgtgctgcgcgccgagcgccagcgcaaagtcggcgaactggtgctc
agccgcgaacccctcagcggcctcgacgaaaacgcccgcagccaggcgctggtcaacctg
gtccggcgcaaaggcctggagctgttgccctggacgccggaactgcgccaatggcaggcc
cgtgtgatgttgctgcgccagctggacaccggcaccaccagcgaatggcccgacgtcagc
gacagcgccttgctcgccagcctggagcactggctgatgccttacctgggcaaggtctcg
cgcctcagtcatttcgccaatctggatatttccagctacctgcacaacctgttgccctgg
ccgttgccccaacgcctggacgaactggcaccgcaccatttgaaagtgccgtcgggttcg
tcggtgcgcttggactacagcgagcatccgccgattctggcggtgcgcctgcaggaattg
ttcggcctggcggatacaccgcgcattgccggcgggcgccaggtggtcaagttgcacctg
ctgtccccggcgcgacggccggtgcaggtgacccaggatctggcgaacttctggcgcagt
acctacgccgaggtgaagaaagatctgaaagggcgctatcccaaacattactggccggat
gacccgttggtggccgaggccaccgcccgaatcaaaccacgcaagtaa
DBGET
integrated database retrieval system
