Pseudomonas veronii: PverR02_28715
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Entry
PverR02_28715 CDS
T04853
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pvr
Pseudomonas veronii
Pathway
pvr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pvr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PverR02_28715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvr03021
]
PverR02_28715
Transcription machinery [BR:
pvr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PverR02_28715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AQY68858
UniProt:
A0A439E2V0
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All DBs
Position
6264511..6266361
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHES
APDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPVDPKAVKADDDAEDDDAEASTDDEDEVESGPDPIIAAQRFGAVSDQMEITRKALKK
HGRSNKLAIAELVALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARM
PRTDFLRQFPGNEVDESWTDALAKGKAKYAEAIGRLQPDIIRCQQKLTALQTETGLTIAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcaccctgggtcgtgag
cagaagtatctgacttacgcagaggtcaacgatcacctgcctgaggatatttcagatcca
gagcaggtggaagacatcatccgcatgatcaacgacatggggatccccgtacacgagagt
gctccggatgcggacgcccttatgttggccgacgccgataccgacgaggcagccgctgaa
gaagccgctgccgcgttggccgcggtggagaccgacatcggtcgcacgactgaccctgta
cgcatgtatatgcgtgaaatgggtaccgtcgagttgctgacacgcgaaggcgaaattgaa
atcgccaagcgtattgaagagggtatccgtgaagtgatgggcgcaattgcgcacttccct
ggcacggttgaccacattctctccgagtacactcgcgtcaccaccgaaggtggccgcctg
tccgacgtcctgagcggttatatcgacccggacgacggcattgcgccacctgctgccgaa
gtgccgccgcctgtcgacccgaaagccgtgaaagcggacgacgatgccgaagacgacgat
gccgaagccagcaccgacgacgaagatgaagtcgaaagcggtccagacccgatcatcgct
gcccagcgtttcggtgcggtttccgatcaaatggaaatcacccgcaaggccctgaaaaag
cacggtcgctccaacaagctggcaattgccgagctggtggcgctggctgagctgttcatg
ccgatcaagctggtgccgaagcaattcgaaggcctggtcgagcgtgttcgtagcgccctt
gagcgtctgcgcgcacaagagcgggcgatcatgcagctctgtgtgcgtgatgcgcgcatg
ccgcgtaccgacttcctgcgccagttcccgggcaacgaagttgacgaaagctggaccgac
gctctggccaagggcaaggcgaaatacgccgaagccattggtcgcctgcagcccgatatc
attcgttgccagcagaagctgaccgcacttcagaccgaaaccggtctgacgattgccgag
atcaaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaa
gagatggttgaagcgaacttgcgtctggtgatctccattgccaagaagtacaccaaccgt
ggcctgcaattcctcgatctgatccaggaaggcaacatcggcttgatgaaggcggtggac
aagttcgaataccgtcgcggctacaagttctcgacttatgccacctggtggatccgtcag
gcgatcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccggcagatgttgcaggaaatgggtcgcgaa
ccgaccccggaagagctgggcgaacgcatggaaatgcctgaggataaaatccgcaaggta
ttgaagatcgctaaagagccgatctccatggaaaccccgatcggtgatgacgaagactcc
catctgggcgacttcatcgaagactcgaccatgcagtcgccaatcgatgtagccaccgtt
gagagccttaaagaagcgacccgcgacgtactgtccggcctcactgcccgtgaagccaag
gtactgcgcatgcgtttcggcatcgacatgaataccgaccacacccttgaggaagtcggt
aaacagtttgacgtgacccgcgagcggatccgtcagatcgaagccaaggcgctgcgcaag
ttgcgtcacccgacgcgaagcgagcatctgcgctccttcctcgacgagtga
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