Pseudomonas veronii: PverR02_29345
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Entry
PverR02_29345 CDS
T04853
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pvr
Pseudomonas veronii
Pathway
pvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PverR02_29345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvr03019
]
PverR02_29345
Enzymes [BR:
pvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PverR02_29345
Messenger RNA biogenesis [BR:
pvr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PverR02_29345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AQY68980
LinkDB
All DBs
Position
6411915..6413825
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AA seq
636 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLL
AHLITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTVEAEKPEVRERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGGKEKAPTNGRGERPAREQKPREGTPAREQRQPSQPSQPSQPPRASADRAPD
EFLDDDVDNFGNRVDYVPQAKPAQGRGRRPGAPAPGAGTGAPRGGQPQGARQNGPRNSSG
GTTGTPPAKRSGPRNGAPRDGQARREDSRSNNRRPARDDQPRLSEPAVQNPRGGPAPKII
HKESKADRFPTPEQLDQLPGRPRGEKPALLTRNREA
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggctattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggctcagacaggtactggtaaaaccggcggcttcgccctcccgattctg
gagcggttgttccccaatggtcacccggacaagtcccagcgtcatggcccgcgccaaccg
cgcgtactggtcctgacccctacccgcgaactcgccgcccaagtgcacgacagcttcaag
ctgtatgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgtggcgttgacgtcctcgtcgcctgcccgggtcgcctg
ctcgacctgtgcggccaaggcagcgtcgatttgtcccacgtggaaatcctcgtgctcgac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaaaaaggtcctcgcccgc
ctgccggccaaacgtcagaacctgctgttctcggcaacgttctccaacgacatcaccgcc
ctggccggcaagttgctgcacaacccggagcgcatcgaggtcacgccgccgaacaccacg
gtcgagcgtatcgaacaacgcgtgttccgcctggccgccagccacaagcgttcgttgctg
gcgcacctgatcacccacggcgcgtgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctcaccgccgtcgccatccac
ggcaacaagagccagaacgcgcgcaccaaagcgctggccgacttcaaggccggtgaagta
cgcatcctggtggccaccgatatcgccgcacgcggcctggatatcgaccaactgccgcac
gtggtcaacttcgagctgcctaacgtcgacgaagactacgtacaccgtatcggccgtacc
ggccgtgccggtcgttcgggcgaagccatctccctggttgcgccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagcaccgttgaggccgagaagcctgaggtgcgcgagcgtccggacgtgcgtaac
ccacgcaatccacgcggtccgaagggcgatggcccgaacggcggcggtggcggcggcggt
cgtcgcgacaagggcaaggacaagggcggcaaggaaaaagcgccgaccaacggccgcggc
gaacgcccggctcgcgagcagaagccccgcgaaggcaccccggcccgcgaacagcgtcag
ccgagccagccaagccagccaagccagccgccacgcgccagcgccgaccgcgcgccggac
gagttcctcgacgacgatgtggataacttcggtaaccgcgtcgactacgtgccccaggcc
aaaccggcccagggccgtggccgtcgtccaggcgctccggctccgggcgctggcactggc
gcaccgcgtggcggccagccacagggcgcgcgtcagaacggcccgcgcaacagcagcggc
ggcaccaccggtacgccaccggccaagcgcagcggcccgcgtaacggcgcaccgcgtgat
ggccaggcgcgtcgcgaagactcgcgcagcaacaaccgccgcccggcccgtgacgaccag
ccacgcttgtccgagccagcggtgcagaacccacgcggcggccctgcgccgaagatcatc
cacaaggagtcgaaagccgaccgcttcccgacaccggagcaactggatcagttgccaggc
cgtcctcgtggtgaaaaaccagcgctgctgacccgcaaccgcgaagcataa
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