Candidatus Planktophila versatilis: A1sIA79_00590
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Entry
A1sIA79_00590 CDS
T05250
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pvs
Candidatus Planktophila versatilis
Pathway
pvs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A1sIA79_00590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvs03400
]
A1sIA79_00590
Enzymes [BR:
pvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A1sIA79_00590
DNA repair and recombination proteins [BR:
pvs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A1sIA79_00590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
PBP_like_2
Motif
Other DBs
NCBI-ProteinID:
ASY16769
LinkDB
All DBs
Position
120175..123660
Genome browser
AA seq
1161 aa
AA seq
DB search
MRGLTQLLQRDDEVTSALADSEKIIAPTPTYPFLLAIRAASKPLLVITSSSKAAEDLADE
LKSLHPEVFEFPAWETLPHERLSPRSDTVAKRLATLYALKTPTGNPIVVAPIRAVIHRFI
ADLAHNPMWTLEIGQEIALTELATHLTALSFTRTDLVEKRGEFAVRGGIVDIFLPLAAHP
VRIDFFGDEIEELSYFDVSDQRTTSPVVGKLSILPCRELLLTDAIRERAESLKQQYPSAI
EILDKITEGIIVDGMESLIPLLTDDFETILDRLPESTEVFFLDQERIKSRTADLIETNAE
FLAASWSSAAIGGNAPLPVEKVTFLDWSGLEQEMSRLSIPVRSLNSFGSDLDSSAEFLDF
SSIDPMRGNVESLCELLRTALEAHESVIFSTPGHGMAERYAGIFRDADLPVQMTAELSAQ
PTKGAIHITQSVMGYGFASSHTGVLFVTERDLSGSKTNTKDSARMPSKRKQAIDPLELRT
GDFVVHEQHGIGRYIELVQRTVADVTREYLVIEYASAKRGQPGDRIFVPTDTLEQISKYV
GGETPTVHRIGSGEWLKAKGRARKAVRQIAGELIRLYAARTSAPGYAFSPDTPWQRELED
AFSYIETPDQLSTIEDVKRDMERPYPMDRIICGDVGYGKTEIAIRAAFKAVQDGKQVAVL
VPTTLLVQQHTKTFAERYAGFPIKVAGLSRFNTAKESKEILADLAQGSVDVVVGTHRILS
NDVQFKDLGLVIVDEEQRFGVEQKESLKKMRTTVDVLSMSATPIPRTLEMAVTGIREMST
ITTPPEERHPILTYVGPAEDAQIKAAIHRELLRDGQIFFIHNRVESIDRAASKLQELVPE
ARIRIAHGQMSEGQLEDVILAFWNRDFDILVCTTIVESGLDIANANTLIVERSENFGLSQ
LHQLRGRVGRGRERAYAYFLYPPDQPLSEIALDRLKTIATNTDLGSGMRVALKDLEIRGA
GNLLGGEQSGHIADVGFDLYMRMVGEAVNEYKTGFIETEEKNHECKVELPVNAHLSESYV
PGERLRLDLYRRLADVRNDAEVKSIQEELVDRFGEPPHEALSLLRVAQLRAFAKSLGVRE
VVAAGKYLRISPLNLPESKQLRLNRLFPGSLYKSASNTVMIAIPRAAAWTPTAQGSAVIG
DTSLLEWAAKSLDDVTKESTS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgggttaactcaacttctgcagcgcgatgatgaagtgacctcggctcttgcagat
agcgaaaaaattattgctcctactccaacctacccatttctcttggcgatcagagcagcc
agcaagccgctcctggtcatcaccagttctagtaaggccgccgaagatcttgccgatgaa
ttgaaatcattacacccagaagtatttgagtttccagcttgggagaccttgccgcacgaa
agactgagccctcgtagtgacactgtcgccaaacgactagcaacgctctatgcgctaaag
actccgacaggcaatcccattgtggtcgcacctattcgagcagtgattcacagatttatt
gcagaccttgcacacaatccaatgtggactcttgaaatcgggcaagagatagcactgact
gagttagcaacgcacctgactgcactgtcatttactcgtaccgatcttgtggaaaaacga
ggcgagtttgcggtgcgaggcgggatcgtcgatatctttttgccgcttgccgcacatccg
gtgcgaatcgatttcttcggagatgaaattgaagagttgtcatatttcgatgtttcagat
cagagaaccacatcgccagtagtgggcaaactttcaatcttgccgtgtcgtgaactctta
ctcactgatgcgattcgagaacgtgccgaatctttaaagcagcaatacccatcggcgatt
gaaattctcgataaaattactgagggcataattgttgatggaatggaatctctgattcca
ctactgactgatgactttgaaacaattttggatcgattacctgaaagcacggaagtcttt
ttcttagatcaagaacgaataaagtctcgaacagctgatctgattgaaacaaatgctgaa
ttcttagctgcctcgtggtcaagtgctgccataggtggcaacgcgccattacctgtggag
aaagtaactttcttagattggtcgggacttgagcaagaaatgagccgactatcgatcccg
gtccgctcactaaattcttttggtagcgatcttgattccagtgcagagttcttagatttt
tcttcgattgatccgatgcgcggaaatgtggaatctctctgtgaattactgcgcactgct
ctagaagctcacgagagcgtgattttctcaactcccggccacggtatggcagagcggtat
gccggaatctttcgcgatgctgacctaccggtgcagatgactgccgagctttcagcgcag
ccaacgaaaggcgcaattcatataactcaatctgtcatgggttatggattcgcaagtagc
cataccggagttttattcgtgacagaacgtgacttatcgggaagtaagacaaatactaaa
gatagcgcgcgtatgccttctaaacgcaagcaggcaattgatccgcttgaactacgaacc
ggtgattttgttgtgcacgaacaacacggaattggtagatatatcgagctagtgcaacgc
accgtggcagatgtgacgcgcgaatatttggttattgagtatgcctcagcaaagcgtggt
caaccaggtgatcgaatatttgttcccacagatactttggagcagatcagtaagtatgtg
ggtggggaaactcccacagtgcatcgcattggaagtggtgaatggcttaaggctaagggc
cgtgcccgcaaggcggtacgccagattgcaggggagttaattcgcttatatgccgcgcgc
accagcgcaccaggatatgccttctcacctgacactccatggcagcgagagttagaagat
gctttttcttatattgaaacaccggatcaactttccacgatagaagatgttaaacgagat
atggaacgcccatatccgatggatcgaattatttgtggtgatgtgggctatggaaagact
gagattgcaatccgagcagccttcaaggctgttcaagatggcaagcaagttgcggtgttg
gttcccacaacgctccttgtgcaacaacatacaaaaacttttgccgaacgttatgccggt
tttccgataaaagtcgctgggctctcgcgctttaacacagcaaaagagagcaaagagatt
ttggctgacttagcgcaagggtcggtagatgttgtagtgggcacacaccgcatcctttca
aacgatgtgcaatttaaagatcttggccttgtgattgtcgatgaagaacaacgttttgga
gttgagcagaaagagtccttgaagaagatgcgcaccactgttgatgtgctttccatgtct
gccacccctataccgcgcacgctagagatggctgttaccggaatccgtgagatgtccacc
atcactactccaccagaagagcgccatcccatccttacttatgtgggaccagctgaagat
gcgcagataaaggctgcgattcaccgcgagctcttgcgcgatggacaaatctttttcatc
cataacagagttgaatctatagaccgagcggcatcaaagttacaagagttagtaccagag
gcccgtataagaattgcccatggccagatgagtgaaggccaactcgaagatgtcattctc
gccttctggaatcgtgatttcgatatcttggtctgcaccaccattgttgagagcggactc
gatatagccaatgcaaatactttgattgtggaacgctctgaaaacttcggactctcccag
ttgcaccaactacgtggtcgagtgggtcgcgggcgagagcgcgcatatgcctacttcctc
tatccaccagatcagccactttcagaaattgcactagaccgattgaaaacaattgcaacg
aacacggatttaggttctggaatgcgagtggcactgaaagacctagagatacgtggtgct
ggcaatctgctcggcggagagcagtcaggacatattgcagatgtcggttttgatttatac
atgcgcatggtgggtgaagcggtcaacgaatataagactggttttattgaaaccgaagag
aagaaccacgaatgcaaagttgaactgccagtcaatgcccacctatctgaaagctatgtt
ccaggtgaaaggctaagacttgatctctaccggcgattagctgatgtgcgaaacgatgcc
gaagttaaatcgattcaggaggaactagttgatcgattcggggagccacctcacgaggcg
ctctccttacttcgagttgcgcaactacgagcatttgcaaaatctcttggcgtgcgagag
gttgtggcagccggcaagtacttgcgcatttcgccactgaatctgccggaatcaaaacaa
ctcagactgaaccgactttttccgggctcgctctataaatcggcatccaataccgtgatg
attgccattccgcgcgctgccgcatggacaccgacggcgcaaggctcggcagtcataggg
gatacttctctcctggagtgggctgcaaaatccctcgatgatgtaacgaaagagagcacc
tcgtga
DBGET
integrated database retrieval system
