Candidatus Planktophila versatilis: A1sIA79_00820
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Entry
A1sIA79_00820 CDS
T05250
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pvs
Candidatus Planktophila versatilis
Pathway
pvs03420
Nucleotide excision repair
pvs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A1sIA79_00820
03430 Mismatch repair
A1sIA79_00820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvs03400
]
A1sIA79_00820
Enzymes [BR:
pvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A1sIA79_00820
DNA repair and recombination proteins [BR:
pvs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A1sIA79_00820
MMR (mismatch excision repair)
Other MMR factors
A1sIA79_00820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
IntS14_C
Motif
Other DBs
NCBI-ProteinID:
ASY16811
LinkDB
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Position
166903..168555
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AA seq
550 aa
AA seq
DB search
MAIEDSILAALDPDQRAVALATRGPVCVIAGAGTGKTRAITHRIAYAAAIGTMDPQKVLA
LTFTAKAAGEMRARLRTLGVPTVAARTIHSAALKQLLYFWPSVFGGRTPDLMTTKTGFLT
EAINRAGLSGSLRATNRELMRDIAAEIEWAKVSQVGPTDYIDEVSKRMQKPRVTPEQMVQ
VYTAYESIKKQELAIDFEDVLLLCSAMLEEERDVRERVQDQYRYFTIDEYQDISPIQQRL
INAWLGTRTDICVVGDPAQTIYSFAGATPVFLNSFTQRFPEAEVIRLTTGYRSTPEITFA
ANALLRHGTMGQELVAFNSHGSKPIVTGYGDEPAEIRGVMAQINALLVNGTQPQEVAILA
RTNAQLKGAEKAMLAQKIPYQVRNTERFFERREVRDFLKQVRQASVIPAEGQGWIDELRS
LAQPYLTGEAIDGIAALLHLARELDDDDNFTPKTLRTYLREVEDRVQQNNPPTMPVVTLA
TLHAAKGLEWERVFLIGASDGQLPLTNSSGEAVIEEERRLFYVGITRAKADLHISYRGNP
SQFLRESGLI
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcgatagaagactcaatacttgcagcccttgatcctgatcaaagggcggtagcactt
gctacacgtggtccggtctgtgtcattgcaggtgctggcaccggaaaaactcgcgcaatc
acacatcgcattgcctatgcagcagcgattggcacgatggatccgcagaaagtattggcg
ctgacctttactgcaaaagctgctggtgaaatgcgagcccgacttcgcacacttggcgtg
ccgaccgttgccgctcgcacgattcactctgctgcccttaagcagctgctctacttttgg
ccctcagtattcggtggtcgcacaccagatctgatgacaaccaagactggctttcttacc
gaagcaattaatcgcgcggggctaagtggctcgctgcgtgctaccaaccgcgaattgatg
cgagatattgccgctgagattgaatgggcgaaggtttctcaagtcggacccactgattac
atcgatgaagtaagtaagcgaatgcagaagccgcgcgttacgccagagcagatggttcag
gtctataccgcctatgaatcaattaagaagcaagagcttgccattgatttcgaagatgta
cttctcttatgttctgcgatgttagaagaagagcgcgatgtgcgcgagcgagtgcaagac
caatatcggtatttcactatcgatgagtaccaggatatttctcccattcaacagcgactg
attaatgcttggcttggaacgcgcaccgatatctgtgtcgttggtgatcccgcccaaact
atttattcatttgctggcgctaccccggtattccttaattcatttacgcaacgttttccg
gaggccgaagttatccgtttaacaactggataccgctccactcctgaaatcacttttgcc
gccaatgcgctcttgcgtcacggaactatgggtcaggaacttgttgcctttaatagccat
ggctcgaaaccaattgtcaccggctatggcgatgaaccggcagagattcgcggagtcatg
gcgcaaatcaatgctctcttagtaaacggcacccagccacaagaggttgcgatcttggct
agaactaatgcacaacttaaaggtgcagagaaagcaatgctggcgcagaagattccatat
caagtgcgaaatacagaaagattctttgaacgccgcgaagtgcgtgatttcctcaagcaa
gtgcggcaagcatcggttattccggctgaaggccaaggatggatcgatgaactacgctcc
ctcgcccagccttatttaacaggtgaagcaatcgatggaattgcagcgctactgcattta
gcgcgtgaactagatgacgatgataatttcactccaaaaactctgcgcacatatctgcgt
gaagtagaagaccgggtgcaacagaacaatccaccgaccatgccggttgtcacactggca
acgctgcatgcagctaaaggtctggaatgggagcgggtatttctgatcggtgcatcagat
ggccaattgccgctgactaatagttcaggtgaggccgttatcgaagaggagcgaaggctc
ttttatgtgggaatcacccgcgccaaggctgatctgcatatctcttatcggggcaatcca
agccaattcctgcgtgaatctggccttatttaa
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