Candidatus Planktophila versatilis: A1sIA79_01965
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Entry
A1sIA79_01965 CDS
T05250
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pvs
Candidatus Planktophila versatilis
Pathway
pvs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A1sIA79_01965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvs03400
]
A1sIA79_01965
Enzymes [BR:
pvs01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
A1sIA79_01965
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
A1sIA79_01965
DNA repair and recombination proteins [BR:
pvs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
A1sIA79_01965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ASY17009
LinkDB
All DBs
Position
379040..379876
Genome browser
AA seq
278 aa
AA seq
DB search
MPELPEVETVRRGLAHFLIGYRFKSAEGLHPRVVKPASLQPLSAVVGAHIKGINRRGKFL
WFELDRELALVAHLGMSGQFLVARKDRPAPGHVRAHFELSKGFKKQELLFRDQRTFGWLS
VEQLTDGIPQSARHIALDPFDAAFDRSAVIARMKARKAAIKSVILNQEIMSGVGNIYADE
SLWRAKIHPEIPACELSVKKIGSLVDAAVQVMAEAVEVGGTSFDAMYINVNGESGFFETS
LAAYGQEGEPCPRCGRGIRRIAFGNRSSHYCPKCQVRT
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgccagagctgcctgaggttgaaacagtacgcagaggattggctcattttctgatcggc
taccgattcaaaagtgccgaaggccttcatccccgagtagtaaagccagcatcgctgcaa
ccactttcagctgttgttggcgcgcatattaagggcattaatcgccgcggtaagttctta
tggtttgaactcgatcgcgagctcgcactggttgcccacttaggaatgtcgggtcagttt
ctagtagcacgcaaggatcgcccagcaccaggccatgtgcgggcgcactttgagttaagt
aaaggatttaaaaagcaggagctgctctttagagatcagcgcacctttggttggttatcg
gtagagcagttaaccgatggcatcccacaatctgcccgccacatcgcactagatcccttt
gatgcagcctttgatcgcagcgcggtgatagccagaatgaaagctcgcaaagcagcgatt
aagagtgtgatcctgaatcaagagattatgagtggggtcggcaatatctatgctgatgaa
tccttatggcgagcaaagattcacccagagatccccgcatgtgagttaagtgtgaagaag
attggctcactcgtagatgcggccgtgcaagtgatggcagaggcggtagaagtaggcggc
acctcatttgatgccatgtatatcaacgtcaatggcgagagcggattctttgaaacatcc
ttagctgcctacggccaagaaggtgagccatgtccacggtgtggtcgggggattagaaga
attgcctttggtaacaggtcctcacattattgtccgaagtgtcaggtgcggacctag
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