Candidatus Planktophila versatilis: A1sIA79_03945
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Entry
A1sIA79_03945 CDS
T05250
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pvs
Candidatus Planktophila versatilis
Brite
KEGG Orthology (KO) [BR:
pvs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvs03016
]
A1sIA79_03945
Enzymes [BR:
pvs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
A1sIA79_03945
Transfer RNA biogenesis [BR:
pvs03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
A1sIA79_03945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
ASY17371
LinkDB
All DBs
Position
776961..778250
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AA seq
429 aa
AA seq
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MPEEEQTPAAIALLHPAAGVPAIIETEQAFDAALAALAQGVGPYAFDAERASGFKYSARA
YLIQIKRTGGGLHLIDPIPFGPGHRCFVELNNLIAEEEVILHASTQDLPCLRELGINPQI
LFDTELGGRIAGLARVGLGPLLESLMGVSLAKEHSAADWSKRPLPEEWLNYAALDVELLV
ELRDKVHALLVDAKKWKWAEEDFAAIISAPAPAPRIDPWRRTSGMHKIKKRLQMAIVREL
WQARDEIARGADVSPSRLLSDAAITELAQNAEKSPITNRKHLEKILRPLGLRARWLENAA
IWITSITTAMELPEDQWPEARSKSDTLPPIKLWRERFPEKFIPLSHARFNLAAKAEELSI
PLENLISPELVRRICWSPPLNSSVQEALQALGARRWQAEIAAPVLEAALLETVALELPEA
EPTSESAEE
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgaagaagaacagacgccggccgctatcgccttactgcatcccgcagcaggagtt
ccagcaatcatcgaaaccgagcaagcatttgatgcggcgctagccgcacttgcgcaaggg
gtcggaccatatgcatttgatgcagagcgtgcatcgggctttaaatacagtgcgcgcgca
tatttgattcagataaaacgcacagggggcggattgcatctgatcgaccctattccattt
ggtcctggtcatcgatgctttgtcgaactcaataatttgattgcagaagaagaagtgatt
ttgcatgcaagtacccaagatcttccctgtctgcgtgaattaggcataaatccgcaaatt
ctctttgataccgaacttggcggacgtattgccggtcttgcccgcgttggcctagggcca
cttttggaatcattgatgggggtatcactagccaaagaacattcggcagctgattggtct
aagcgcccattgccggaagaatggcttaactacgcagcacttgatgtggaacttctggta
gaactgcgcgataaagtccatgcactcttagtagatgcaaagaaatggaaatgggccgag
gaagattttgccgcaatcatttctgctcctgcgccggcccctcgtattgatccatggcgt
cgtacttctggaatgcataaaattaagaagcgactgcagatggcgatagtgcgcgagtta
tggcaggcgcgggatgagattgcgcggggcgcagatgtctcacctagtcgattgttatca
gatgccgcgattactgagttggcgcagaatgccgagaagtcacctattacaaatcgcaaa
catctggagaagatcttgcgcccgctcggattgcgagcgcgctggttagagaatgcagcc
atatggattacatcaatcaccactgcaatggagttgccagaagatcagtggccagaggcg
cgttctaaaagcgataccttgccgccgattaaactctggcgcgaacgttttcctgaaaaa
ttcatcccgctttcacatgctcgctttaaccttgctgccaaggccgaggagctttcgatc
cctcttgagaatctgattagcccggaactcgtgcgccgcatctgttggtcgcctccccta
aacagctctgtgcaggaggccttgcaagcgctgggtgcccgtcgctggcaggccgagata
gctgctcccgtccttgaggcggcccttttggagaccgtcgccctggagctgcccgaggca
gaacccacttcggagtcggctgaagagtga
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