Candidatus Planktophila versatilis: A1sIA79_05460
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Entry
A1sIA79_05460 CDS
T05250
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pvs
Candidatus Planktophila versatilis
Pathway
pvs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A1sIA79_05460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvs03021
]
A1sIA79_05460
03400 DNA repair and recombination proteins [BR:
pvs03400
]
A1sIA79_05460
Enzymes [BR:
pvs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A1sIA79_05460
Transcription machinery [BR:
pvs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A1sIA79_05460
DNA repair and recombination proteins [BR:
pvs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A1sIA79_05460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
ASY17646
LinkDB
All DBs
Position
complement(1072468..1073478)
Genome browser
AA seq
336 aa
AA seq
DB search
MLIAQRPTLSEEVISENRSRFIIEPLEPGFGYTLGNSMRRTLLSSIPGAAVTSIRVAGAL
HEFTTLEGVKEDLTDIVLNIKNLVLSSDNDEPSVIYIRKSGTGAVTGADIAVPSGVEVHN
PELHIATLNGKANLEIELTVERGRGYVTAVQNKQAGAEIGRIPVDSIYSPVLKVTYKVEA
TRVEQRTDFDRLVVDVETKPSMKPRDAVASAGKTLVELFGLARELNLDAEGIEMGPSVMD
AALAADLALPIEDLDLTVRSYNCLKREGIHTVGELVNRSEADLLDIRNFGSKSIDEIKAK
LVSMGMSLKDSPAGFDPSQHQNYNVSDEDFADADQA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
gtgctaattgcacaacgcccaacgcttagcgaagaagtaatttccgagaaccgctcacgt
ttcatcatcgaaccacttgagccaggtttcggctacacactcggcaactcaatgcgccgt
actctgctctcatctattccaggtgctgcagtaacaagcattcgcgttgctggagctctc
cacgagttcacaactcttgagggtgtaaaggaagatctcacagatatcgtcttgaacatt
aagaaccttgttctttcaagtgataatgatgaaccttcagtaatttacatccgtaagtca
ggtactggtgctgtcacaggtgctgatatcgctgttccaagtggagtagaagttcacaac
ccagagcttcacatcgcaacactaaacggcaaggcaaaccttgaaatcgagcttacagtc
gagcgcggtcgcggatacgtaactgcagttcagaacaagcaagctggcgcagagattggt
cgcattcctgttgactcaatctattcgccagttcttaaggtgacctacaaggttgaagca
actcgcgttgaacagcgcacagacttcgatcgtcttgttgttgatgttgagacaaagcca
tcaatgaagccacgcgatgccgttgcatctgctggaaagacacttgttgagctcttcgga
cttgctcgcgaacttaatcttgatgcagaaggtattgagatggggccatctgttatggat
gccgccctcgctgcagaccttgctcttcctatcgaagatctcgatctcacagtacgttca
tataactgcttgaagcgcgaaggcattcacacagtgggtgaactcgttaatcgttcagag
gctgacctacttgatatccgtaacttcggatcaaagtcaatcgatgagatcaaggcaaag
cttgtatcaatgggaatgtcacttaaggacagcccagcaggatttgatccttcacaacac
cagaactacaacgtgtcagatgaagacttcgctgacgcagatcaggcataa
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