Candidatus Planktophila versatilis: A1sIA79_05635
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Entry
A1sIA79_05635 CDS
T05250
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pvs
Candidatus Planktophila versatilis
Pathway
pvs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A1sIA79_05635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvs03021
]
A1sIA79_05635
03400 DNA repair and recombination proteins [BR:
pvs03400
]
A1sIA79_05635
Enzymes [BR:
pvs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A1sIA79_05635
Transcription machinery [BR:
pvs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A1sIA79_05635
DNA repair and recombination proteins [BR:
pvs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A1sIA79_05635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ASY17679
UniProt:
A0AAC9YWF2
LinkDB
All DBs
Position
complement(1093898..1097704)
Genome browser
AA seq
1268 aa
AA seq
DB search
MLDVNFFDELRIGLASAQNIRDWSFGEVKKPETINYRTLKPEKDGLFDEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITEVDAEAREEDMPQLEKKLANDRKKIETKRDVDVDTRTKKLEAD
IAELEAEDAKSDVKRKVRESAERELKAIRERAERELTRLEDVWSRFKNLKVQDLEGDENL
YREMRDRYGMYFKGDMGAAAIKKRLETFDLETEHAMLTDLSENGKGAKKTRAIKRLKVVN
AFMTTSNHPASMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLADL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPANGRPITSPTQDMVLGLYYLTMDREGVLGEGR
AFGSIAEAIMAHDQHSVSLQAKVKIRVKGETLETTIGRALFNEALPEQFPFVDHDVTKKA
LGAIVDKLAEFYPKVTVAQTLDALKSLGFHWATRAGVTIGIEDVVTPPRKREILESYETQ
ADKVQSQYEKGLITDDERRQELIEIWTKATAEVGKEMEENFPRLNPVWMMVFSGARGNMM
QIRQIAGMRGLVANPKGEIIPRPIKSNFREGLSVLEYFISTHGARKGLADTALRTADSGY
LTRRLCDVAQDVIIREEDCGTDRGLVLPIATRIEAGSLVKHDHVETSVYGRTLAEDITVN
GEVIAQAGADLGDRNIDALVAAGVDEVKIRSVLTCDSKVGQCAACYGRSLAAGQLVAVGE
AVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITHGLPRIVELFEARTPKGVAPIAEAAGV
VSFREDAKGKKIIVTPDDGGEEVAYPITRRQKLLVEEGTRVEVGQKMVVGAIDPKQVLRI
LGPRATQVHLVNEIQSVYRSQGVGIHDKHIEVIVRQMLKRITVLEAGDTEMLPGELVERG
RFEAENRRVVTTGAKAASGRPELMGITKASLATESWLSAASFQETTRVLTDAALSEKSDP
LLGLKENVIIGKLIPAGTGLARYRNIRVEPTEEAKAAVYAAYDEYDFTPFDQQGSGEAVR
LDEVEIPR
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgttagatgtcaacttctttgatgaactacgaatcggtcttgcatcggctcaaaatatt
cgtgattggtcttttggcgaagtaaagaagccagagacaatcaactaccgcacacttaag
ccagagaaggacggactcttcgacgagaagatcttcggaccaactcgtgactgggaatgt
tattgcggtaagtacaagcgcgttcgattcaagggaatcatctgcgagcgttgcggtgtt
gaagtaacacgcgcaaaggttcgccgcgaacgtatgggtcacatcgagcttgccgctcct
gttactcacatctggtacttcaagggtgttccatcacgccttggctacctacttgacctt
gcacctaaggatctcgagaaggttatctatttcgctgcttacatgatcacagaagttgat
gctgaagctcgcgaagaagatatgccacagcttgagaagaagttggccaatgatcgcaag
aagatcgaaacaaagcgcgatgttgatgtcgatactcgtaccaagaagcttgaggcagat
attgctgaactcgaagccgaagatgcgaagtcagatgtgaagcgcaaggttcgtgaatct
gcagagcgcgagctcaaggcaatccgtgaacgtgcagagcgcgaactcacccgcctagaa
gatgtctggtcacgctttaagaaccttaaggttcaagatctcgaaggtgatgagaatctt
taccgcgaaatgcgtgatcgctatggcatgtatttcaagggagatatgggagctgctgca
attaagaagcgccttgaaactttcgaccttgaaacagagcatgcaatgctcactgacctt
tccgagaacggcaagggcgcgaagaagactcgtgctatcaagcgtctgaaggttgttaac
gcatttatgacaacgagcaaccacccagcatcaatggttctcgatgccgtaccggtcatc
ccacctgatctgcgcccaatggttcagctagatggtggacgctttgcgacttcagatcta
aacgatctctatcgccgcgttattaaccgtaacaatcgtttgaagcgccttgctgatctt
ggtgctccagaaattattgtgaacaacgaaaagcgtatgttgcaggaagctgtagatgcg
ttgttcgataacggtcgtcgtggtcgtccagttactggcccaggaaaccgcgcactgaag
tcactgtcagacatgcttaagggtaagcaaggacgtttccgtcagaacttgctcggaaag
cgcgttgactactcaggtcgttcggtaatcgttgttggtccacagttgaagctgcaccag
tgcggtctgccaaagcagatggcgctagaactcttcaaaccattcgtaatgaagcgtcta
gtagaccttaaccacgcgcagaacattaaatctgcaaagcgcatggttgaacgtgctcgt
ccagttgtatgggatgttcttgaagaagttattgcagaacatccagtgcttctcaaccgc
gctcctacacttcaccgtttaggtatccaagcatttgaaccacagctggttgaaggtaag
gcaattcagattcacccactcgtatgtacagcatttaacgctgacttcgacggtgaccag
atggctgtccaccttccattatctgctgaagctcaggctgaagcacgtatcttgatgttg
tcatcaaataacatcttgtcaccagcaaatggtcgcccaattacatctcctacccaggac
atggttcttggtctctactacttaacaatggatcgcgaaggcgtacttggcgaaggccgt
gcattcggctctatcgctgaagcgatcatggctcatgatcagcactcagtttcattgcaa
gcaaaggtaaagattcgcgttaagggagaaactctcgagacaacaatcggccgcgctctc
tttaatgaggcgctacctgagcaattcccattcgttgatcatgatgtaactaagaaggca
ctcggcgcaatcgtcgacaagcttgctgagttctatccaaaggtcaccgtggcacagaca
ctcgatgcgcttaagtcactcggtttccactgggcaactcgcgctggtgtaacaatcggt
atcgaagatgttgtcacacctcctcgtaagcgtgaaatcctagaaagctatgaaacacaa
gccgacaaggttcaatcacagtacgaaaagggactcatcacagatgacgagcgtcgccag
gaactcattgagatctggaccaaggcaacagctgaagttggtaaagagatggaagagaac
ttccctcgtctaaacccagtttggatgatggtcttctcaggtgctcgtggaaatatgatg
cagattcgtcagatcgcaggtatgcgcggactcgttgcaaacccaaagggtgaaattatt
cctcgcccaattaagtccaacttccgtgaaggcctctctgttctcgagtacttcatctca
actcacggtgcacgtaagggtcttgcagatacagcgcttcgtaccgctgactctggttac
ctcacacgtcgtctttgcgatgttgctcaagatgtcatcattcgcgaagaagattgcgga
accgatcgtggtctcgtacttccaatcgctactcgcattgaagctggcagcctggttaag
catgatcacgttgaaacttctgtctatggccgcacattggctgaagacattactgtcaac
ggtgaggtcattgcccaagccggcgccgaccttggcgatcgcaacattgacgcactcgtt
gctgcaggagtagatgaagtaaagattcgctcagttcttacttgcgatagcaaggtcgga
cagtgcgcagcttgctatggtcgctcccttgctgccggtcaactcgttgcagtcggtgaa
gcagtcggaatcatcgcagcacagtcaatcggtgaaccaggaacgcagctcacaatgcgt
accttccacaccggtggtgttgccggtgatgacatcactcacggtctcccacgtatcgtc
gagctcttcgaagcacgtacacctaagggtgttgcgccaatcgcagaagctgctggcgtt
gtctcattccgtgaagatgcaaagggtaagaagatcatcgtgacaccagatgatggtggc
gaagaagttgcttacccaatcacacgccgtcagaagctacttgtagaagaaggaacacgc
gttgaagttggccagaagatggtcgtcggcgcaattgatcctaagcaggtacttcgtatc
ctcggaccacgtgcaactcaagttcacttggtgaacgagatccaatctgtttatcgctca
cagggcgtaggcattcacgataagcacatcgaagttattgttcgccaaatgctcaagcgc
attactgtgcttgaagcgggcgatactgaaatgcttccaggtgaactcgttgaacgcggt
cgctttgaagctgaaaaccgtcgcgttgtgacaactggtgctaaggctgcatctggtcgc
ccagaacttatgggtatcaccaaggcatcccttgcaactgagtcatggttatctgcggct
tcattccaggaaacaactcgcgtactaacagatgccgcgctctctgagaagtctgatcca
ctcttgggtctgaaggagaacgtcatcatcggtaagttgatccctgctggaacaggcctt
gcccgttaccgcaacatccgcgttgaacctactgaagaagcgaaggcagcggtctatgcc
gcctacgacgagtacgacttcactccatttgatcagcaaggatcaggagaagcagtacgt
cttgatgaggtagaaattcctcgctaa
DBGET
integrated database retrieval system
