Pogona vitticeps (central bearded dragon): 110072038
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Entry
110072038 CDS
T05000
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pvt
Pogona vitticeps (central bearded dragon)
Brite
KEGG Orthology (KO) [BR:
pvt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvt03041
]
110072038 (YTHDC2)
Enzymes [BR:
pvt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110072038 (YTHDC2)
Spliceosome [BR:
pvt03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110072038 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
AAA_19
Ank_2
AAA_22
nSTAND3
ATPase
Ank
Ank_4
PhoH
AAA_7
AAA_16
AAA_23
AAA_29
T2SSE
SRP54
ABC_tran
Motif
Other DBs
NCBI-GeneID:
110072038
NCBI-ProteinID:
XP_020635682
UniProt:
A0A6J0SH91
LinkDB
All DBs
Position
Unknown
AA seq
1456 aa
AA seq
DB search
MSRPSSVSPRPPGGGPQTAGPAAASASSASSSGPGGGRAKGLKEIRIDEEVKIAVNIALE
RFRYGDQREMEFPSSLTSTERAFIHRLSQSLGLISKSKGKGANRYLTVKKKDGSELAHAV
MTCNLTLNTKHAIRSLVQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGI
PQIPVKRGESEFDSFRQSLPVYEKQDEIVRIIKENKVVLIVGETGSGKTTQIPQFLLDDC
YKNGIPCRIFCTQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNG
VLLRTLMAGDSALSTVTHVIVDEVHERDRFSDFLLTKLRDTLQKHSSLKLILSSAALDVN
LFVRYFAGCPVIYIPGRPFEVKEMFLEDILRSTGYTNKEMIKYKKEKLREEKQQTTLTEW
YSAQDNSKLELQRQRAVTNVAEDNDLLDDGGDTVFSQLAEKDVNCLEPWLIKEMDACLSD
IWLHKDIEAFAQVFHLILTENVSVDYRHSDTSATTLMVASGRGFLSQVEQLIGMGANVHI
KSSNGWTALDWAKHFGQTEVIDLLESYCASLESGNLDESSLVHANASELSAEDREILKAY
HHSFDDEKVDLDLIMHLLFNICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADNNHR
FQVFMLHSNMQTSDQKKVLKPSPPGIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFD
ALNCVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQE
LCLHTKLLAPINCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADL
PVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFS
DHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGG
GDIRDVNTNSENWAVVKGALVAGMYPNIVHVDRENIVLTGPKEKKVRFHPTSVLSQPQYK
KIPPANGQVAAIQALPTDWLIYDEMTRAHRIANVRCCSAVTPVTVALFCGSARLPSNALQ
EPSSFRVDGAPNDSSDSEMEDKTTANLAALKLDEWLNFKLDPEAASLLLQLRQKWHSLFL
RRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPVASSWRS
NSSRKSSAEGEFVDDAFNPEKNPPKASLSYDINKEQNSTILRVLMKSASPAFHQPLKFKE
RSVQHSKRSTDDRSDQLSLKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMK
SSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSVVHLVFSVQGSGHFQGFARMSSEIGR
EKSQDWGSTGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQL
LQLWDRIPLGEKNTAD
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgacccagcagcgtctcgccccggcctccgggaggtgggccccagacggcgggc
cccgcggccgcctccgcctcgtcggcgtcgtcctctggccccggtggcggccgggccaag
gggctgaaggagattcgcatcgacgaagaagtgaagatcgccgtgaacatcgccctggag
cggttccgctatggggaccagcgagaaatggaatttccatcgtctttgaccagtactgaa
agagcattcattcaccgattgagtcagtctcttggtctgatttccaaaagtaaggggaaa
ggagcaaacagatatctcactgtgaagaaaaaagatggatcagaattggcacatgcagtg
atgacctgtaatttgactctgaatacaaagcatgcaattaggagcctagtacagagattt
cctgtcaccaacaaagaacgcacagagcttttgccgaagacagagagaggaaatgtattt
gctgttgaagcagagaacagagagatgagcaaaacaagtgggcgacttaacaatggtatc
cctcaaatcccagtgaaacgtggagaatcagagtttgattcatttcgacaatctctgcca
gtttacgaaaagcaagatgaaattgttagaattattaaagaaaataaagttgttttgatt
gtgggtgaaactggatcaggaaaaactacacagattcctcagtttctacttgatgactgt
tacaaaaatggaataccctgtcgaatattttgcactcagccaagacgtttagcagcaata
gctgtggctgaaagggttgctgctgaaagaagagagaagattggccagaccattggttat
cagatccgactggaaagcagagtttctccaaagacactgttaacattttgcaccaatggt
gtattacttcgtacactaatggctggagatagtgcactgtcaacagtaactcatgtcatt
gtggatgaagtccatgagagggatcgcttcagtgatttcctgttaacaaagttaagagat
actttacagaaacactcatctttgaaactgatactctctagtgctgctctggatgtgaac
ctgtttgtcagatactttgcaggctgtccagtaatatatataccaggaagaccttttgaa
gtcaaagaaatgttcctggaagacatattaagaagtacaggctatacaaataaagagatg
attaaatacaaaaaggaaaaactgcgagaggagaaacaacagacaactctgactgaatgg
tattctgcacaagacaatagcaagctagaacttcaacgacaaagggcagttacaaatgta
gctgaagataatgatctgttggatgatggcggtgacacagttttcagtcagttggctgaa
aaagatgtcaactgtcttgaaccttggttaattaaagagatggatgcttgtctttctgat
atttggctgcataaagatattgaagcctttgcacaggtgttccaccttattttaactgaa
aatgtcagtgttgattacaggcacagtgatacaagtgcaacaaccttaatggtagcttct
ggaagaggtttcttgagtcaagtagaacagctgattggtatgggagcaaatgttcacatc
aaatcatccaatggctggacagccttggactgggctaaacattttggacaaacagaagtg
attgatctgttggagtcttattgtgcctcactagagtctggtaatctagatgaaagttcc
ttggtccatgctaatgcaagtgaacttagtgctgaagatcgagaaatcctgaaagcttat
catcacagttttgatgatgaaaaggtggatcttgacttgatcatgcacttgctgttcaat
atctgtcatagctgtgatgcaggagcagttttaatttttcttcctggatatgatgagatt
gttggcttgagggatcgcattctatttgatgacaaaaggtttgccgataacaatcacaga
ttccaagtttttatgttgcattcaaatatgcagacatctgatcagaagaaagtgttaaag
ccctcacctccaggcatacgcaaaataatactttctacaaatattgctgaaacaagtatc
acagttaatgatgttgtctttgtgattgattccggaaaaatgaaggagaagtcctttgat
gcattgaactgtgtaacaatgttaaagatggtatggatttctaaagctagtgccattcaa
aggaagggcagggcaggacgttgtcgacctggaatttgtttccgacttttcagtagacta
aggtttcaaaatatgctggaatttcagactccagagcttctaagaatgcctctgcaggag
ctttgtttgcatacaaaactgctagctcctatcaattgtccaattgctgactttttaatg
aaagctccagagccgccacctgctttaattgtgagaaatgctgtgcagatgcttaagaca
atagatgctatggatacctgggaggatctgacagaacttggctatcatctggctgactta
ccagtcgaaccccaccttggtaaaatggtcttatgcgctgttgttctcaagtgcctggat
cctattctgaccattgcgtgcacccttgcatatcgtgacccttttgtgctaccaacacag
gcctctcaaaaacgtgcagccatgctgtgtagaaaacggtttactgcaggaacatttagt
gatcatatggcccttctcagggcttttcaggcatggcagaaggcacgaagtgatggctgg
gaaagagctttttgtgagaagaacttcctttctcaggcaacaatggagattatcatagga
atgagaacacagttgcttgggcagctcagagcatcaggttttgtaagagccagaggtggt
ggagatataagagatgttaatacaaactcagagaactgggctgtggtcaaaggtgcctta
gtagctggaatgtatccaaatatagttcatgttgacagagagaacattgtgttgactggg
ccaaaagagaaaaaagtgcgatttcatcctacctcagttctgagccaaccacagtataaa
aagattcctccagctaatggccaagtggcagctattcaggcactccctacagactggctt
atatatgatgaaatgacaagagcccaccgaattgctaatgtcaggtgctgttcagctgtg
actccagtcactgtagccctcttctgtggatcagctagattgccaagtaatgctttgcag
gagccttcatcgttcagagtagatggtgctcctaatgatagcagtgacagtgaaatggaa
gacaaaacaacagctaatttggctgcattgaaactggatgaatggctcaatttcaaacta
gatccagaggctgccagcctcctcctccaactgagacagaaatggcacagcttatttctc
cggcggatgagagcgccttcaaagccctggtctcaggttgacgaggcaactatacgagcg
atcattgctgtgttgagcactgaagaacagtctgcaggtctgcagcagccttctggaatc
ggacagagacccaggcccatgtcatctgaagaacttcctgtagcatcttcgtggagatca
aactctagtcgaaaaagctcggcagaaggagaattcgtagatgatgcatttaatcctgaa
aaaaatccccccaaagcgtctttaagttatgatataaacaaagagcagaacagtacaata
ttaagagttctaatgaagtctgcatctccagcatttcaccaaccactgaaattcaaagag
agaagtgtccagcattccaaaagaagcacagatgacaggtcagaccagttatctctgaaa
tctacggacagtagcagttaccccagcccctgtgccagtccctctcctccatcatctgga
aagggctcgaagtctccttccccacggccaaatatgcctgttcgatactttattatgaaa
agcagcaatttgaggaatcttgagatttcacagcagaagggaatttggtctacaacccca
agtaatgagcgaaagctgaatcgagccttttgggagagcagtgttgttcacttggtgttt
tctgttcaaggctcaggccatttccagggttttgctcgaatgtcttcagagataggtcgt
gaaaaaagccaagactggggctctacaggtttaggaggagtattcaaagtggaatggatc
cgtaaggaaagccttccctttcagtttgctcatcatttgctaaatccttggaatgacaac
aagaaagtacaaataagtcgagatggccaggaattggaacctcaggttggtgaacaactg
ctacagttgtgggaccgtattcctttaggggagaaaaacacagctgattga
DBGET
integrated database retrieval system
