Pogona vitticeps (central bearded dragon): 110072530
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Entry
110072530 CDS
T05000
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pvt
Pogona vitticeps (central bearded dragon)
Pathway
pvt03013
Nucleocytoplasmic transport
pvt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110072530 (UPF1)
03015 mRNA surveillance pathway
110072530 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvt03019
]
110072530 (UPF1)
Enzymes [BR:
pvt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110072530 (UPF1)
5.6.2.5 RNA 5'-3' helicase
110072530 (UPF1)
Messenger RNA biogenesis [BR:
pvt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110072530 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
110072530 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
110072530
NCBI-ProteinID:
XP_020636617
UniProt:
A0A6J0SJQ9
LinkDB
All DBs
Position
Unknown
AA seq
1132 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGGSGTAGVAAS
GPPGTPGTPGVGTGLPSVGAPGGQLDAQVNGPDGILQNGAVDDGVPKTSQLLAELNFEED
EEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEV
TLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQ
WQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEE
PQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLP
KTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNCEDYGDEIAIELRSSVGAPVEV
THNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTA
QGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNI
AVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETG
ELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE
CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMH
PALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYL
NRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIAS
VDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLW
NHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGS
VYDRSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPA
AGRGNLKGKAGRGGRQKNRFGLPGASQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPS
QMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgaggcgtacgggcccagctcccagacgctgacgttcctggacaccgaagag
gccgagctgctgggcgccgacacgcagggctccgagttcgagttcaccgacttcaccttg
cccagccagacccagacgccgcccggcggaggctccgggaccgctggcgtggccgcctcg
ggcccaccggggacccccgggacccccggcgtcggaaccggactgccttccgtgggcgcc
ccggggggacagctcgacgcccaggtgaatgggccagatggcatccttcagaatggggcc
gtggatgatggcgtgccgaagaccagccagcttcttgcagagctcaatttcgaggaagac
gaggaagacacttactacaccaaggaccttcctgtacatgcctgcagctattgcggcatc
catgacccggcctgtgtggtctactgtaacaccagcaagaagtggttctgtaacgggcgt
gggaatacatccggcagccacattgtgaaccatctcgtgagagccaagtgcaaggaagtg
actcttcataaggacggccctcttggcgagaccgtcctggagtgttacaactgtggttgc
cgaaatgtgttcctgttgggcttcatcccagccaaggctgactctgtggtggtcttgctg
tgcaggcagccatgtgccagccagagcagtctgaaagacatcaactgggacagctcccag
tggcagcctttaatccaggaccgctgcttcctttcctggctggtcaagatcccctccgag
caggagcagctgagagcccggcagatcacggctcagcagattaacaagctggaagaactc
tggaaggagaatccatcggccaccctagaggacttggagaagcccggcgtcgacgaggag
ccgcagcacgtcctgctgagatacgaagatgcttatcagtaccagaatatcttcgggcct
ttggtcaagctggaggccgactatgacaagaaactgaaggagtctcagacccaagacaac
atcactgtgagatgggaccttggcctgaacaagaagcggattgcctactttacgctgccc
aagactgattcagatatgcgtctgatgcagggagatgagatctgtctcaggtacaagggg
gatttggcccctctgtggaaaggaatcggccacgtcattaaagttcctgataactgtgaa
gattacggcgatgaaattgccatcgagttgaggagcagcgtcggggcccccgtggaggtc
acccacaacttccaagtggactttgtctggaagtcgacctctttcgacagaatgcagagc
gccctgaaaacatttgcggtggatgaaacctctgtctctggctacatctaccacaagctt
ctgggtcacgaggtggaggatgtgatcatcaaatgtcagctgcccaagcgcttcacggcc
caagggcttcccgacctcaaccattctcaggtgtacgccgtgaagaccgtcctgcagcgc
cctttgagcctcatccaggggccgcccgggactggcaagacagtgacctcggccaccatt
gtgtaccacctggcgagacaagggaacgggccggtcctcgtttgtgccccgagtaacatc
gcggtggaccagctgaccgagaagattcaccagacgggcctgaaggtggtgcggctgtgt
gcgaagagccgcgaggccatcgactctcccgtctcctttctggcgctccacaaccagatc
aggaacatggacagcatgcctgagctgcagaagctgcagcaactgaaagatgagaccggg
gaactgtcgtcagcagacgaaaagcgctaccgggctctgaaacggacagctgagcgggaa
ctgctgatgaatgcggatgtcatctgctgtacctgcgtgggggccggggatccgaggctg
gcgaagatgcagttccgctccatcttgatcgacgagagcacccaggccactgagccggag
tgcatggtcccggtcgtccttggagccaagcagctgatcctggtgggggaccactgccag
ctgggccccgtcgtgatgtgcaagaaggcggccaaagcgggcctctcgcagtctctcttt
gagcggctggtggtgctgggcatccgtcccatccgcctgcaagtgcagtaccgcatgcat
cccgccctgagcgctttcccctccaacatcttctacgaggggtctctccagaacggcgtc
actgcagcggaccgtgtgaagaaaggctttgacttccagtggccccagccggataagccc
atgtttttctacgtgacccaaggccaagaagagattgcaagctcaggcacctcttacctg
aacagaacagaagcagccaacgtggagaagattaccaccaagctgctgaaggctggagcg
aaaccagatcagattgggatcatcaccccctatgagggccagcgctcctatctggtgcag
tatatgcagttcagtggctctctgcataccaagctgtatcaggaagtggaaattgccagc
gttgatgctttccagggacgagagaaggactttattatcctgtcgtgcgtcagggccaac
gaacaccaagggattggctttctgaatgatccccggcggctgaacgtcgctctcaccaga
gccaggtatggggtcattatcgtcggaaacccaaaggccctctccaagcagcccctctgg
aaccacctgctgaactactacaaggagcagaaggtgttggtggaagggccgctgaacaac
ctccgggagagcctcatgcagttcagcaaaccccgcaagctggtcaataccatcaatccc
ggagcccggttcatgacaactgccatgtacgatgctcgcgaagccatcatccctggatcc
gtgtatgaccgcagcagccaaggccggccttccaacatgtatttccaaacgcacgatcag
atcgggatgatcagcgccgggcccagccacgtcgccgccatgaacattcccatcccgttc
aacctggtgatgccacccatgccgcccccgggatattttgggcaggccaacggacccgct
gccggacgcggcaacctgaaaggcaaggccggccgcgggggacgccagaagaaccgcttt
ggcctgccgggggccagccagtccaacctgcccaacagccaagccagtcaagacgtggtc
tcgcagcctttctctcagggacccttgacccagggctacatctccatgagccagccctct
cagatgagccagccgggcctctctcagccagaactgtcccaggacagttaccttggcgat
gagtttaaatctcagatcgatgtggccctgtcgcaggattcgacgtaccagggggagcgc
gcctatcaacacggagtgaccgggctgtcacagtattag
DBGET
integrated database retrieval system
