Pogona vitticeps (central bearded dragon): 110086446
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Entry
110086446 CDS
T05000
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pvt
Pogona vitticeps (central bearded dragon)
Pathway
pvt03030
DNA replication
pvt03410
Base excision repair
pvt03420
Nucleotide excision repair
pvt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110086446 (LIG1)
03410 Base excision repair
110086446 (LIG1)
03420 Nucleotide excision repair
110086446 (LIG1)
03430 Mismatch repair
110086446 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvt03032
]
110086446 (LIG1)
03400 DNA repair and recombination proteins [BR:
pvt03400
]
110086446 (LIG1)
Enzymes [BR:
pvt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110086446 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
110086446 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
110086446 (LIG1)
DNA replication proteins [BR:
pvt03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
110086446 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
110086446 (LIG1)
DNA repair and recombination proteins [BR:
pvt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
110086446 (LIG1)
NER (nucleotide excision repair)
Other NER factors
110086446 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
110086446 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
DDR
PknG_TPR
Motif
Other DBs
NCBI-GeneID:
110086446
NCBI-ProteinID:
XP_020663017
UniProt:
A0A6J0UUS7
LinkDB
All DBs
Position
Unknown
AA seq
925 aa
AA seq
DB search
MQSTIRSFFQPLARKKVEEQIEENSHVEKVPSPKKKPVNSEQLINSRAPCTENSTAKKAS
QILNSGDEVNPQKSERKNTKTGDSKQESVCVTEQINPAENISPSTSPAASNSPSPTSIPR
RKTDLSQTLARKQIPKRKAEEEVNSHDSSQDNGSAKRRKGDDNDGDGSKEEPDERPMDLD
VKDEKDKNSELGEHETETKTEEEKMMELHKPSSKPISSFFAPRKTSVKTEKKTMPVLGEK
TPALKSHTEVNNHESNSFAGNSLKPSVKLEPAEYNPAKNNYHPVHDACWGPGEKVPYLAV
ARTFERIEEESARLKIIETLSNLFRSVVALSPEDLLSCVYLCLNRLGPAYEGLELGIGKT
ILMKALAQATGRQLDQIKAEAAEKGDLGLVAESSRTTQGIMFAPPKLGAAAVFSKLQAIG
RMMGSSSMNKKIDIIKSLFVACRHSEARYIARSLEGKLRIGLAEQSVLSALAQAGSLTPP
GQKFPPEVLDAAKGKSAEARKAWLDERALIVKQAFCELPNYDIIVPVLLEHGVESLPQHC
KITPGIPLKPMLAHPTKGIGEVLKRFEEAAFTCEYKYDGERAQIHILENGEVHIYSRNQE
NNTSKYPDIVSRIPKVKKTTVNSCILDAEAVAWDPDSKQIQPFQVLTTRKRKDVDAADIK
VQVCVYAFDMLYLNGQSLVQKPLSQRRTLLRDSFMEVEGQFLFATSMDTSNTDEIAEFLE
RSIKDSCEGLMVKTLEVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRA
GTYGGFLLACYDVESEEFQSICKIGTGFTDEALEKLHTSLKDHVIPQPRPYYRWGGIAEP
DHWLEAQHVWEVKCADLSVSPAHKAATGLVDEDKGISLRFPRFLRIRDDKKPEEATSSTQ
VAELYFKQQQIQNQQSIEKGDDDFY
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcaccataagatcattttttcaacctctggcacgcaaaaaggttgaagaacag
atagaagagaatagtcacgtggagaaggtgcccagtccaaaaaagaaaccagtaaattct
gaacaactgataaatagtagagcaccttgtacagagaattctacagccaaaaaagcttcc
cagatacttaatagtggagatgaagtgaatcctcagaaatcagaaaggaagaatacaaag
actggggatagcaagcaggaatctgtctgtgtcactgagcaaataaaccctgcagagaat
atctccccaagcaccagcccagctgcctctaattcaccctcacctaccagtatcccacgg
cgaaaaactgacttatctcaaactttagcccgcaagcagatccccaaacggaaagcagaa
gaagaagtcaacagccatgatagctcccaggataatggtagtgccaagaggcggaaggga
gatgataatgatggagatggatcaaaagaggagccagatgagaggcccatggacttagat
gtgaaagatgagaaagataaaaattcagaactgggagagcatgagacagaaaccaaaaca
gaggaagagaagatgatggaactccataagccatccagcaaacccatatctagttttttt
gcccccagaaagacctctgtgaagacagagaaaaagacaatgcctgtcttgggggaaaag
acacctgcactgaagagccatactgaagtcaacaaccatgagtccaatagctttgctggc
aattctctcaagccatctgttaaacttgagccggcagagtacaaccctgcaaagaacaat
tatcatccagtccatgatgcatgctggggtcctggtgaaaaggtcccataccttgctgtg
gctcgtacctttgaaaggattgaagaggaatctgcccggttgaaaattatagagacccta
agcaatctgttccgctctgtggttgccctgtctccagaagacctgctttcctgcgtctac
ctctgtcttaatcgattaggcccagcatacgagggcctagagctgggtattggcaaaacc
atccttatgaaagctttggctcaagccacaggtcgacagctggaccaaatcaaggcagag
gcagcagaaaagggagatcttggactagtcgctgagagtagccgtaccacacagggcatc
atgtttgccccacccaagcttggggctgctgccgtctttagcaaactgcaggccattggg
cgtatgatgggaagttcttccatgaataagaagattgatattatcaagtctctgtttgtt
gcctgtcgccattcagaggctcgctacattgcacggtcactggaaggaaagttgcgaatt
ggtttagcagagcagtcggttctgtcagccctggcccaggcaggatcactcactcctcca
gggcaaaaatttcctccagaggtactagatgccgcaaagggcaaatctgcagaggcacgc
aaagcctggttagatgagagagccttgattgttaagcaagccttctgcgagctgccaaat
tatgacatcattgtgcctgtgcttctagagcatggcgtggagagcttgcctcaacattgc
aagatcacaccagggatccccttgaagcccatgcttgctcatccaacaaagggcattggg
gaagtattaaagcgttttgaagaagcagctttcacttgtgaatacaagtatgatggggag
cgagcccagattcatatcttggagaatggagaagtgcacatctatagccggaaccaagag
aacaacacatccaagtatcctgacattgtcagccgtatccccaaggtgaaaaagacaact
gtgaactcctgcatcttagatgcagaggctgtggcttgggatcctgattccaaacagatc
cagccattccaggtactaaccactcgcaagcgcaaggatgtagacgccgcagatatcaaa
gtgcaagtatgtgtgtatgcatttgacatgctctatctcaatgggcagtcgctggtccag
aaacccttgtcacagcgtcggactttactgcgtgactccttcatggaggttgaaggtcag
tttctctttgctacctccatggacactagtaacacggatgagatagcagaattcctcgaa
cgctccatcaaagattcctgtgaagggctaatggtgaaaacactagaagtggatgctaca
tatgaaatcgcaaagaggtcccacaattggttgaagctaaaaaaagattatctggaggga
gttggagataccctggacctggtggtaatcggcgcctacctgggcaagggcaagcgtgca
gggacatacggtggtttcctcctagcctgctatgatgtggaaagtgaagagttccagagc
atctgcaagattggcactggattcacagatgaagctcttgagaagctccatacctctctc
aaggaccatgttattccacagccacggccatactatcggtggggtggtatagcagagcct
gaccactggctggaggcccagcatgtctgggaagtgaagtgtgcggatctgtcagtttct
cctgcccacaaagcggcaacaggattggtggatgaagacaaaggtatctcacttcgtttc
cccagattcctgcgcatcagagatgataagaaaccagaggaggccacttctagcacccag
gtggccgagctgtacttcaagcagcaacagatccagaatcagcagtcaattgaaaaagga
gatgatgatttctactaa
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