Pogona vitticeps (central bearded dragon): 110088691
Help
Entry
110088691 CDS
T05000
Symbol
SKIV2L
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pvt
Pogona vitticeps (central bearded dragon)
Pathway
pvt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110088691 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvt03019
]
110088691 (SKIV2L)
Enzymes [BR:
pvt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110088691 (SKIV2L)
Messenger RNA biogenesis [BR:
pvt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110088691 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
110088691 (SKIV2L)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DUF3516
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
110088691
NCBI-ProteinID:
XP_020666809
LinkDB
All DBs
Position
Unknown
AA seq
1291 aa
AA seq
DB search
MELERIALPPRKPLDLPLSILEVGCAGRFELITHEKEPNRDGFPITTLPHGLPPYAEDLA
SELEQQFLNSPEWLPIHHFERSHRVWPREKDVQSLFQVDITPVHSTLQADRNPTTGELLG
FKEALVDNMGLSAKNSLSFQRAPGPPAEALRGSATNYPFWPGGMDEPSLEQIKAQEDLEE
DIDFEKDLLTVPPGWKRGVEFTKQELKASPGMLNLTNLLGALDTLDLEVSSDEEGDKEKA
KVTEKKEGKERKTKKEEVPPAEPAQLQRANSLEELVLKEVTPSPKSAPQTAPAPTAEPLK
EQWAIPVNISSPVDDFYKRIPDPAFKWPFEPDVFQKQAILHLEKHDSVFVAAHTSAGKTV
VAEYAIALSQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLHPDASCLIMTT
EILRXELGEGQGLGXPGWGWARYLNPSLRGVVWEEVLIMLPDHVNIILLSATVPNTLEFA
DWIGRIKRKKIYVISTLKRPVPLEHYLYTGNSQKTQNELFLLVDARGTFLTKGTHASCLK
EKVELLKYKTALILAPHLGFGQCGICARGLVEEEPHDFLQFATLHSFSSDKNIWLSLIDM
LRKKDQLPVVAFTFSRNRCDDNASMLTTVDLTTTTEKSEIHVFFQKCISRLKGTDRQLPQ
VLHMVDLLKRGIGVHHSGILPILKEVVEMLFSKGLVKILFATETFAMGVNMPARTVVFDS
IRKHDGTNFRDLVPAEYIQMAGRAGRRGLDTTGMVIILCKNQVPEMADLHRMMLGKPTQL
QSQFRLTYTMILNLLRVEALRVEDMMKRSFSEFHTRKDSKAHEHRVAQLSSILANMEAPD
TSGQLSDLKEYYYVVRELQETRDLIQRRVMESMNGLKALSVGRVVVVKNQEHQNALGVVL
QVSSDSTNRSFSTLVICEKNPTEGETPTNTKSDLPSPPEVPLPDDLLRTKLFLPERSCGH
TIKKLGSSDISGITTKTLRVNAERILEDYKKRQMPRFRNEPPGPSAATATQELLRLAEGS
PEGLPLLDPINDLQLKDLEVVEGIVKARRLEEALPGFQCVHSPRFHMEFVRFRERQRVLE
EIEQLRYLLSDQSLLLLPEYHQRVEVLRSLGYINHSGAVELKGSVARQISNHELLLTQLL
LDNTLTDLRPEEIVALLSCTVCQVRTQVEPQLPSVLQKGIEHIRSVAEEIALLQRKCGLQ
ESVEDFVEQYKFGLVEVVYEWARGMPFAEIARLTDVQEGIIVRCIQRLDETCREMRNAAR
VTGEPTLHAKMEAASNMIKRDIVFAASLYTQ
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atggagctggagaggatcgcactgccccccaggaaacctctggatctgcccctctccatt
ctagaagttggatgtgctggtcggtttgaactcatcacacatgagaaggagcccaacagg
gatggttttcccatcactacgttgccgcatggcttgcccccttatgctgaggatctggcg
tccgaactggagcagcagtttcttaacagcccggagtggcttcccatccatcacttcgaa
aggtctcacagggtctggccccgagagaaagacgtccagtcccttttccaagtggacatc
acaccggtgcactccacacttcaggcggatcgcaatcctaccacgggcgagcttctcggt
ttcaaagaggcccttgtagacaacatggggctttcagccaagaattcactttcctttcaa
cgagcccctggtcccccagccgaggctctgcgaggcagcgccaccaattatcctttctgg
ccaggtgggatggatgaacccagcctggagcagatcaaggctcaagaagacttggaggag
gacattgattttgagaaagatttgctgacggtgccacccggctggaaaagaggggttgag
ttcacaaagcaagagcttaaggcctctcctgggatgctgaatttgaccaatttgctggga
gcactggacaccttggatctggaggtctccagcgatgaagaaggggacaaggagaaggct
aaagtaactgagaagaaagaagggaaggaaaggaagacaaagaaagaagaggttccccca
gcagaaccagcacaactgcagagggcaaacagcctggaggaactggtgctgaaggaagtg
acacccagccccaaatcagccccacagactgccccagctcccacagccgaacccctcaaa
gagcagtgggccatccccgtcaacatcagctcccccgtggatgatttctacaagcgaatt
cctgacccagctttcaagtggccctttgagcctgacgttttccagaaacaggccattctc
cacttggagaagcacgattctgtctttgtcgccgcccacacctcggcggggaagacggtg
gtggccgagtacgccatcgcgctctctcagaagcacatgacacgcaccatatatacttcc
cccatcaaagctctttccaaccagaaattccgggatttcaaaaacacctttggggacgtg
gggttgttgaccggggatgttcagcttcatccagatgcctcgtgtctcatcatgacgacg
gagatcctccggtaagaactgggagaaggtcagggtctcgggtgaccagggtggggttgg
gccagatatctgaatccttcccttcgtggtgtggtctgggaggaagtcctcatcatgttg
ccagaccacgttaacatcatcctgctcagtgccacggtccccaacaccctggagtttgct
gactggattgggaggatcaagaggaagaagatctatgtgatcagcacgctgaagcgccct
gtcccgctggagcattacctctacacaggcaacagccagaaaacccaaaatgaacttttc
cttctggttgacgcccgcgggacgttcctcactaagggcacacatgcatcttgtttgaag
gagaaagtggagcttctgaagtataaaacggcacttattttggcaccgcacctcggtttt
gggcagtgtggcatttgtgccagaggtttggtggaggaagagcctcatgacttcttgcag
ttcgccactctacactcattttccagtgacaagaacatctggctgtccctcattgacatg
ctgcggaagaaagatcagctgccggtggtggccttcaccttctcacgcaaccgctgtgac
gacaatgcctccatgctgaccacggttgacctgaccacaaccacagaaaaaagcgaaatc
catgtcttcttccagaagtgtatctcccgcctgaagggcacagaccgtcagttgcctcag
gttctacacatggtggatctcttgaagcgtggcatcggagtgcatcacagcggcatcctg
cccatcctgaaggaagtcgtggagatgctcttcagcaaagggttggtcaagatcctcttt
gccacagagacttttgccatgggggtgaacatgccagcaaggaccgtggtcttcgattca
atccgtaaacacgacggcactaatttccgggatctggtgccagctgagtacatccagatg
gcgggccgagcaggacgccgagggcttgatacgactgggatggtcatcatcctgtgcaaa
aaccaagtgcctgagatggctgaccttcaccgaatgatgttgggcaaaccgactcagctg
cagtcccagttccgtctcacttacaccatgatcctgaacctcttgagggtggaggctctg
cgagtggaggacatgatgaagagaagcttctcggaattccacacccggaaagacagcaag
gcccacgaacacagagtcgcccagctgagctccatcctggccaacatggaagcgccagat
acgtcaggacagctcagtgacttgaaagagtattattatgtggttcgagagctgcaggag
acccgagacctcatacagaggcgagttatggaatccatgaatgggctgaaggccctttct
gtggggcgagtggtggtcgtgaagaatcaggagcaccaaaatgccttaggggtggtcttg
caggtttcttccgactcaaccaatcggtccttcagcaccttggtgatatgtgagaagaat
cccactgaaggggagacccccacgaacacaaagagcgacctcccctcccctccagaagtg
cctcttcctgatgaccttctgcgcaccaagctctttcttcccgaacgttcctgtggacat
acgataaagaagctaggctcctccgacatctccggtatcacaaccaaaactttgcgtgtc
aatgctgaacgcatcctggaggattataagaagcgacagatgcctaggttcaggaatgag
ccgccaggtccatctgcggccacagccacccaggaactgctgcgtttggccgagggctcc
ccggagggcctccccctcttggatcccatcaacgatcttcagctaaaggatctggaggtg
gtggagggcatagtgaaggcccggcgccttgaggaggcactgccaggatttcagtgtgtg
catagcccccgcttccacatggagtttgtgcggttccgagagcgccagcgggtgctggag
gagatagagcagctacgttacctgctctccgaccagtccctcctcttgctgcccgagtat
caccaacgcgtcgaggtcctgcgttccctcggctacatcaaccacagtggggccgtggag
ctcaaagggagcgtggcccgtcagatcagcaaccacgagctgctcctgacgcagctgctc
ctcgacaacaccctgacggacctgcggccggaggaaattgtggccttgctcagctgcacc
gtctgccaggtgcgcacccaggtggagccccagctgccctccgtccttcagaagggcatc
gagcacatccgatcggtggccgaagagatcgcccttttgcagcggaagtgcggcctgcag
gagtctgtggaggactttgttgagcagtacaaattcgggctggtggaggtggtctacgaa
tgggcccgcggcatgccgtttgcagagatcgctcgcctgacggacgtccaggaagggatc
atcgtccgttgcatccaacgcctggatgagacctgtcgggagatgcgtaacgctgcccgg
gtcaccggggagccgaccctccatgccaagatggaggctgcctcgaacatgatcaagagg
gacatcgtctttgccgccagcctctacacccagtga
DBGET
integrated database retrieval system
