Pogona vitticeps (central bearded dragon): 110088695
Help
Entry
110088695 CDS
T05000
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pvt
Pogona vitticeps (central bearded dragon)
Pathway
pvt03013
Nucleocytoplasmic transport
pvt03015
mRNA surveillance pathway
pvt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110088695 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
110088695 (DDX39B)
03015 mRNA surveillance pathway
110088695 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvt03019
]
110088695 (DDX39B)
03041 Spliceosome [BR:
pvt03041
]
110088695 (DDX39B)
Enzymes [BR:
pvt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110088695 (DDX39B)
Messenger RNA biogenesis [BR:
pvt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110088695 (DDX39B)
Spliceosome [BR:
pvt03041
]
Complex C
Other components
EJC/TREX
110088695 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110088695 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
110088695
NCBI-ProteinID:
XP_020666819
UniProt:
A0A6J0V8A8
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MTENDVDNELLDYEDDEVENQAAGEGVDVPSKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaatgatgtcgacaatgagctgttggattatgaggatgatgaggtggaaaac
caggcagctggagaaggggtggacgtcccgtcaaagaaagatgtcaagggatcctacgtc
tccatccacagttctggcttccgtgattttctcctgaaaccggagctcttgcgagctatt
gttgattgcggttttgagcacccctccgaagtgcaacatgagtgcatcccacaggccatc
ttgggcatggatgtactgtgccaggccaaatctggcatgggcaagaccgcagtctttgtt
cttgctacacttcagcagctggagccagtcacaggtcaggtgtcagtccttgtgatgtgt
cacacccgtgagctggccttccagattagcaaggagtacgagcgcttctctaagtacatg
cccagtgtcaaggtggcagtattttttgggggcttgtccatcaagaaggatgaagaagtg
ctgaagaagaactgcccccatatcgtggtggggactccgggccgcatcctggcgttggcc
cgcaacaagagcctcaacctcaagcacatcaagcacttcatcctggacgaatgcgataag
atgcttgagcagcttgatatgcgccgggatgtccaggagatcttccgcatgaccccgcac
gaaaagcaggtcatgatgttcagtgccactctcagcaaggaaatccgccccgtgtgccgc
aaattcatgcaagaccccatggagatcttcgtggatgacgagaccaagctgacgctgcac
ggtctgcagcagtactatgtcaaactgaaagacaacgagaagaaccgcaagctctttgac
ctccttgatgttctggagttcaaccaggtggtcatctttgtgaagtctgtgcagcgctgc
attgcactggcccagctgctggtggagcagaacttcccggccattgccattcacaggggt
atgccccaggaagagaggttgtcacgataccagcagttcaaggatttccagcgtcgtatc
ttagtagccaccaatctcttcggacgtggcatggacattgaacgagttaacattgctttc
aactatgacatgccggaggattcggacacatatctgcaccgggtggcgcgtgccgggcgc
tttggcacaaagggcctggcgatcacttttgtgtcggatgagaatgatgccaagatcctc
aatgaagtgcaggatcgctttgaagtcaacatcagcgagctgcctgatgagatcgacatc
tcctcctacattgaacagacccgataa
DBGET
integrated database retrieval system
