Pogona vitticeps (central bearded dragon): 110089115
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Entry
110089115 CDS
T05000
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pvt
Pogona vitticeps (central bearded dragon)
Pathway
pvt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110089115 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvt03019
]
110089115 (PARN)
Enzymes [BR:
pvt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110089115 (PARN)
Messenger RNA biogenesis [BR:
pvt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110089115 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
FNIP_C
NCBP3
Motif
Other DBs
NCBI-GeneID:
110089115
NCBI-ProteinID:
XP_020667613
UniProt:
A0A6J0V5W6
LinkDB
All DBs
Position
Unknown
AA seq
643 aa
AA seq
DB search
MEITRSNFKDNLSKVYKAIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTESKYVTKSFNFYIFPKPFNRTSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGVGALSYVSPNATKCPVTVPEDQKKF
IEKVVERIDALWQNEDTPSLQLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYII
VSKVDEEERKRREQQKQVKEQEELKDAVGFSRVVHALANSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLNEFKELTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFSPPKV
ESAEGFPSYNTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPDQVQIAVNTSKYAESYRIQTYAEYVEKKHEERQQGKRKWAEDSWKETEGKRL
KTQAAPYVLQSRYYNVNSFTATGTVGKRSMSPIQEESGLDEAEVEEEEEEEEEGLDSPGT
HTESLGEEKKRGKRFKKAKREDAAPAGDLQTSPARLFEVPDMW
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggagataacccggagcaattttaaggataatctgagcaaagtttacaaagctattgag
gaggctgacttcttggctattgatggagagttttcaggaattagcgatgggccttctgtt
agtgcgttaaccaatggctttgacacacctgaagaaaggtatcagaagctcaaaaagcat
tccatggatttcttactcttccagtttggcctttgcacttttaaatatgaccacacggaa
tctaaatatgtcacaaaatcatttaatttctacatcttccccaaacctttcaacagaaca
tcaccagatgtcaagtttgtctgtcagagttcaagtatagactttttagcaaaccaggga
tttgattttaataaagtttttcgcaacggaatcccttatttaaatcaagaagaggaaagg
cagctgcgggagcagtatgatgagaagcgctctcaagccaacggagtgggggccttgtcc
tacgtgtctcccaatgccacgaaatgcccagtgacggttccggaggaccagaagaagttc
atcgaaaaagtggtggaaaggatagacgctctctggcagaatgaagacactcccagtttg
cagctggagccttgcacggggtttcagaggaagctgatctatcagacactgagctggaag
tatcccaaaggcatccacgttgaaaccctggagaccgaaaagaaggaaagatacatcatc
gttagcaaagtggacgaagaggaacgcaagcggcgggagcagcagaagcaagtgaaagag
caggaggagctgaaggacgcggtgggcttctcccgagtcgttcacgcccttgcaaattct
ggcaagcttgtggtcggtcacaacatgttgctagacgtcatgcataccatccaccagttc
tactgccccctccctgaggatctcaacgagtttaaagaactaacgacgtgcgtctttccg
aggttactggacaccaaactgatggccagcactcagcccttcaaggacattattaacaac
acctcccttgcagagctggaaaagcgtctgaaggagacccccttcagccctccgaaagtc
gaaagcgctgaaggtttcccaagttacaacacggcatcggagcagcttcacgaagccggc
tacgacgcgtatataaccggcctgtgtttcatctccatggccaactacctaggttccttc
ctcagtcctcccaaaaaccacgtctctgcgaggtcgaagctcattgaaccgtttttcaac
aaattgttcctgatgagggtgatggatatcccctacctcaacttggaaggccctgacttg
cagcccaaacgcgatcatgttctttacgttacatttccgaaagaatggaagacgagcgac
ctctaccagctttttagtgctttcggtaacattcaggtgtcctggattgatgacacgtcg
gccttcgtgtccctgagccaaccggatcaagttcagatcgccgtgaacaccagcaagtac
gcagaaagctaccgaatccagacctatgcagaatacgtggagaagaagcacgaggagagg
cagcaggggaagcggaagtgggccgaggacagctggaaggagacggagggcaagcgtctg
aagacgcaggcggccccctacgtccttcagagccgatactacaacgtcaacagtttcaca
gcaaccggcacggtcgggaagagaagtatgagtcccatccaggaggagagcggcctcgat
gaggccgaggtggaagaagaagaagaggaggaggaggagggcctggattccccgggaacc
cacacagagtccctgggggaggagaagaagagaggcaagcggttcaagaaggccaaaagg
gaggacgccgccccagcaggagacctccagacctctcccgccaggctcttcgaagtccca
gacatgtggtag
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integrated database retrieval system
