Phaseolus vulgaris (common bean): 137806267
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Entry
137806267 CDS
T03093
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137806267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137806267
03012 Translation factors [BR:
pvu03012
]
137806267
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137806267
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137806267
Translation factors [BR:
pvu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137806267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
ATPase
AAA_11
NPHP3_N
PhoH
Dicer_dimer
Rad17
Peptidase_M9_N
T2SSE
Motif
Other DBs
NCBI-GeneID:
137806267
NCBI-ProteinID:
XP_068462378
LinkDB
All DBs
Position
3:2958254..2978030
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AA seq
1102 aa
AA seq
DB search
MSLRIPFLAMDSPLPVHVADADNEVNCDAEFGTSSLPSDLLSEDWKQKLSMLLNDQSKQE
LISREKKDRRDFQRIEALASNMGLYSHMYAKVVVVSKVPLPNYRYDLDDKRPLREVNLPT
TVLRQVDGYLQEYLTQKSRRKESFSDLWCARPRDSGSIGTDEGFFEPPQSLSSSRAVVER
ILCQRSSEMRDQQRVWQESPDGRKILEFRSSLPAYKEKEAILSAISRNQVLIISGETGCG
KTTQVPQFILESEIELLRGAVCNIICTQPRRIAAISVSERVASERGEKLGETVGYKVRLE
GMRGRDTHVLFCTTGILLRRLLDDKNLKGITHIIVDEIHERGINEDFLLVVLKDLLACKP
ELKLILMSATLDAELFSSYFNSASTMKIPGFTYPVRTHFLEDILEMSGYRLTPENQFDDY
GQERIWKMDKQVPRKRKSQLSSSVEDVLRAADFNYYSLQTRESLSCWNPDCIGFNHIEYI
LCNICEDERPGSILVFMIGWDDINALKEKLLTHPVLSDPNRVLLLMCHGSMDSLEQRLMF
EEPKDGVRKIVLATNIAETSITINDIVFVIDCGKAKESSYDALNNTRCLLPTWISKVSVQ
QRKGRAGRVQPGECYHLYPRCVYDSFKEHQLPEILRMPLQSLCLQIKSLKLGSISEFLSR
ALQAPEILAVQNAIQYLKTIGALDKNENLTILGRQLTVLPMEPKLGKMLIFGVIFNCLDP
ILTIVAGLSVRDPFLTPLDKKDLAQAAKSQFSHDYSDHLAIVRAYDSWKDAEIDNAEHDY
CWKNFLSPQSMKVIDALRVEFLSLLKDIGLVDRNMTSCNAWSYDMYLIRAAICYGLYPGI
CSVVHKDNSFSLKTMEDGKVLLHSNSVNARETIIPYPWLVFNEKIKVNSVFLRDSTAVPD
SVVLLFGGSISKGDTDGHLKMSGGYLEFFVKPAVADMYQSIRKDLDKLIHSKLQFPQMSI
HSFHELLFAIRLLICTDKCEGRFVFSCQLLKPSMMAVQQALVSRTDSGPGGDNTKGQLQT
LLTRAGYGAPFYTTKQLKNNEFRATVEFNGVQIMGQPYSNKKNAEKDAAAEALQWLMGRI
QTGNEDTNHMTMLLKKSKKDHN
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttcgcattccatttctcgccatggattcgcctcttcccgttcatgttgccgat
gccgacaacgaggtaaattgcgatgctgaatttggaacttcttcactaccaagtgattta
ctcagcgaggattggaagcagaaattaagcatgcttttgaatgatcagagtaagcaagag
ttgatctcaagggagaaaaaggatcgccgtgattttcagcgaatagaggctttggccagc
aacatggggttgtatagccatatgtatgcgaaggttgttgttgtcagcaaagtccctctt
ccaaattacagatatgatttggacgataaacgtccccttagggaggtgaacctacctact
actgtgttaaggcaagttgatggatatcttcaagaatacctaacccaaaagtcaagaagg
aaggaaagcttttcagatttgtggtgtgctagaccacgcgacagcggtagtattggtaca
gatgaagggttttttgagccacctcagtcactatcatccagtagggctgtagtggagaga
attctctgtcagagaagttcagaaatgcgtgatcagcaaagagtttggcaggaatctcca
gatggaagaaaaattctggaatttcgtagcagtctacctgcttataaagagaaggaagcc
atattatcagccatatcaaggaatcaggtacttatcatttcgggtgaaacaggttgtgga
aagacaacacaagttccacagtttatcctagaatctgagatagaattacttcgtggagct
gtgtgtaatattatttgcacacaaccaagacgcattgcagcaatttctgtttctgaaaga
gttgcctctgaaagaggagagaaattgggtgaaaccgttggatataaagttagacttgaa
ggcatgcgagggagagatacccatgttctcttttgcaccacaggcatcttattaagaaga
ttactagatgataaaaacttaaaaggcataactcatattattgttgacgaaattcatgag
cgtgggattaatgaagattttctgcttgttgtccttaaagatcttctagcttgcaaacca
gaactgaaactgattttaatgagtgctacccttgatgccgagctcttctcttcatatttt
aatagtgcttcaactatgaagattccgggttttacatatcctgtcagaactcattttttg
gaggatattctggaaatgtcgggctacagattgactcctgaaaatcaatttgatgactat
ggtcaagaaaggatttggaaaatggacaaacaggtgccaagaaagaggaaaagccaatta
tcttcttctgtggaggatgtattaagagctgctgatttcaattattacagtctgcaaaca
agggagtctttatcttgttggaatcctgactgtatcggttttaaccacatagagtatatt
ctgtgcaatatatgtgaggatgaaagaccaggttccattttggttttcatgattggatgg
gatgatataaatgctctgaaggagaagctcctaacacatcctgtcttgagtgatccaaac
cgagttttgttgctgatgtgccatggctcaatggacagtttggagcagaggttaatgttt
gaagaacctaaagatggagtacggaaaatagtgctagcaacaaatattgctgaaacgagt
atcacaatcaatgatattgtttttgtcatcgactgtgggaaggcaaaagaatcttcatat
gatgcactgaataacacacgttgtttgcttcccacttggatctctaaggtttcagttcaa
caaagaaaaggaagagctggtcgtgttcaacctggagaatgttatcatctctatcctaga
tgtgtatatgattctttcaaagagcatcagttacctgaaattttgaggatgcccttgcaa
tctctctgtctgcaaatcaaaagtttgaaactaggaagtatatctgagttcttgtctagg
gctttacaggctcccgagatacttgcggtacaaaatgcaattcaatatttaaaaacaatt
ggagctctggataagaatgagaatctgactattctagggcgccagttgacagtgcttcca
atggaacccaaacttggcaagatgttgatatttggtgttatcttcaattgcctggatcct
atattaactattgttgctggccttagtgttagagatccttttctaacacctttggataaa
aaagatcttgcacaggcagcaaagtctcagttttcccatgattacagtgatcatcttgcc
attgtgagggcctatgatagctggaaggatgccgagatagacaatgctgagcatgattac
tgctggaaaaattttctttctccacaatccatgaaagttattgatgcccttcgtgtggaa
ttcttatccctgctcaaagatattggattagttgatagaaacatgaccagttgcaatgca
tggagctatgatatgtatctcattcgagcagctatttgctatggcctatatcctggaatc
tgctcggttgtgcataaggataattcattttctctgaaaacaatggaggatggcaaagtg
ctcctacattcgaattcagtgaatgcccgggaaactataattccatatccatggctagtt
tttaatgagaagataaaagtgaactctgtatttctccgtgactcaacagctgtgcctgat
tctgtggtacttctttttggtgggagcatctcaaaaggtgatactgatggtcacttgaaa
atgtcgggaggatatttggagttttttgtgaaacctgctgttgctgacatgtaccagagt
ataaggaaagatcttgacaaactcattcatagtaaattacaattcccgcagatgagcata
cactcattccatgagctcttatttgctatacggttgctgatttgcactgacaaatgtgaa
ggaagatttgtatttagttgccagctccttaaaccatcaatgatggcagtgcaacaagca
ttggtttcaagaacagacagtggacccgggggtgataatactaaaggtcagcttcaaaca
ttgctgacacgagctggatatggtgcacccttctacaccactaagcaattgaagaataat
gagtttcgggctacagttgagtttaatggagtgcagataatgggccaaccatatagcaac
aagaagaatgcagaaaaagatgctgcggctgaggcactgcagtggcttatgggtagaata
caaacagggaatgaggataccaatcacatgacaatgttgctgaagaaaagtaagaaagat
cataattga
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