Phaseolus vulgaris (common bean): 137806367
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Entry
137806367 CDS
T03093
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137806367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvu03041
]
137806367
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137806367
Spliceosome [BR:
pvu03041
]
Complex C
Other components
Step II factors
137806367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Helicase_RecD
PhoH
TsaE
ABC_tran
AAA_29
Flavi_DEAD
AAA_30
Motif
Other DBs
NCBI-GeneID:
137806367
NCBI-ProteinID:
XP_068462531
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All DBs
Position
3:4799550..4813563
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AA seq
706 aa
AA seq
DB search
MPSVHRGNFPNHQTQFSARRQKIMQQRKSLPIASVEKRLVEEVRKNDVLIIVGETGSGKT
TQIPQFLFDAGFCRDGRVGITQPRRVAAVTVAKRVAEECGVELGQKVGYAVRFDDTTSGS
TRIKYMTDGLLLREALLDPYLSKYSVIIVDEAHERTVHTDVLMGLLKNVQLVRSSSVSDG
QGLIFGKRNLKKVMMSEKENDQSSHLHKKPRHEKYAPLKLIIMSASLDAQAFSEYFGGAK
AVHIQGRQFPVDIFYTRIAETDYLDASLITIFQIHLEEGPGDILVFLTGQEEIESVERLI
NEKLPQLPKENQKLLIVPIFAALPSEQQMRVFAPAPSGFRKVILATNIAETSVTIPGIKY
VIDPGFVKARSYDPGKGMESLIIVPTSKSQALQRSGRAGREGPGKCFRLYPEKEFEKLED
STMPEIKRCNLSNVILQLKALGVDDILGFDFIEKPSRAAIIKSLEQLFLLGALTDECQLS
DPVGHQMARLPLDPIYSKALILASQFNCLEEMLISVALLSVESIFYSPRDKLEEARTATK
CFSSPEGDHITLINVYRASKDFLEKRSMEMGIAKTEKVYRKWCKENYINSRSLRHARDIH
KQIKGHVEQMGLNLSSCGEDMLQFRRCLAASFFLNAAVKQPEGTYRALASGQVVQIHPSS
VLFRQKPECVIFNELVQTNNKYVRNLTRVDYLWLTELAPQYYAMQN
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgccttcagtgcatcggggaaacttccccaatcaccaaacgcagttctccgctcggagg
cagaagataatgcaacagaggaagtcccttccgattgcttcagttgagaaaagactggtt
gaagaggtccggaagaacgatgtgttgattattgttggtgaaactggaagtggaaaaact
actcagattcctcagtttctgtttgatgctggattttgccgcgatggaagggttgggata
acacaacctagacgcgtagctgctgtcactgtggccaaacgagttgctgaggagtgtggt
gttgagttgggtcagaaggtcgggtatgctgttagatttgatgacacgacttccggctca
acaaggattaagtacatgaccgacggtttgcttttgagggaagcattgctagatccatat
ctttctaagtattctgttataattgttgatgaggctcatgagaggactgttcacactgat
gtcttaatgggtttgctaaagaatgtacagcttgtgcggtcaagttctgttagtgatggt
cagggccttatttttggaaaaaggaatttgaagaaagtcatgatgtcggagaaagaaaat
gaccagagtagccatttgcataaaaagccccgccatgagaagtatgccccactgaagtta
atcatcatgtccgccagtcttgatgcacaggctttctctgaatactttggtggtgccaaa
gctgttcacatccaagggagacagtttcctgtagatatattttatactcgcatagcagag
acagattatttagatgcttccttgataacaatattccagattcatttagaggaaggtcct
ggtgatatactagtatttctgactgggcaagaagagattgaatctgttgaaaggcttatc
aatgagaaactcccacaattacctaaagaaaatcagaagcttttaattgtgcctatattt
gccgctcttccatctgagcagcaaatgcgggtctttgcaccagctccatctggatttcgc
aaggtgatattggcaactaatattgctgagacgtcagtaacaattcctggaatcaagtat
gtaattgatcctggatttgttaaagcccgctcctatgaccctggaaaaggcatggagtcc
ttgattatagtgcctacatccaagtcccaagctctgcaaagaagtgggcgtgcagggcgt
gaaggacctggaaaatgctttcgtctatatcctgaaaaagaatttgagaaactcgaggac
tcaacaatgccggagattaagcggtgcaatctttctaatgtcattttgcagcttaaggcc
ctgggtgttgatgacatactaggatttgattttattgagaaaccttcaagggcagctatt
ataaaatcattggagcagctatttttgttgggtgccctaacagatgagtgtcaactatct
gatcctgtaggacaccaaatggctcgactgccgttggatcctatttattccaaagctctt
attttagctagtcagtttaactgcttggaggagatgttgataagtgtagccctgctgtct
gtggaatccatattttatagtcctcgtgacaagttagaagaggcaagaactgcaactaaa
tgcttctcaagtcctgagggagaccacatcacattgattaatgtgtatcgagcatctaaa
gattttttggagaagagatcaatggaaatgggtatagcaaagactgaaaaggtttatagg
aaatggtgcaaagaaaattatattaatagccggtctcttagacatgctcgtgacattcac
aagcagattaagggacatgttgaacaaatgggtcttaatctttcttcatgtggagaagat
atgcttcaattccgcagatgcctagctgcttcctttttcctcaatgcagctgtaaaacag
ccagaggggacatacagggctttggcaagtggtcaggtggtgcagatccacccttcttcc
gtattatttcggcaaaaaccagagtgtgtgatatttaacgaattggtccaaactaataac
aagtatgtcagaaatttaaccagagttgattacctatggttaactgagctggctcctcaa
tattacgccatgcagaattaa
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