KEGG   Phaseolus vulgaris (common bean): 137807198
Entry
137807198         CDS       T03093                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
pvu  Phaseolus vulgaris (common bean)
Pathway
pvu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    137807198
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvu03019]
    137807198
Messenger RNA biogenesis [BR:pvu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     137807198
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 EIF3I ANAPC4_WD40 WDR55 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_Vps41 WD40_RFWD3 eIF2A Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_NUP159_NUP214 Ge1_WD40 Cytochrom_D1 Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_WDR11_1st CFAP43_N Beta-prop_WDR75_2nd Nbas_N Beta-prop_WDR11_2nd PROPPIN DUF5711 PD40 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 137807198
NCBI-ProteinID: XP_068463795
LinkDB
Position
3:complement(33067025..33070402)
AA seq 321 aa
MKLGGIKSVENAHDDSVWAVTWVPATANRPPLLLTGSLDETVRLWRSDDLLLDRTNTGHC
LGVASVAAHPLGSLAASSSLDSFVRVFDVDSNATVATLEAPPSEVWQMRFDPKGAILAVA
GGGSASVKLWDTSTWELVATLSIPRPEGPKPTDKSGSKKFVLSVAWSPDGKRLACGSMDG
TISVFDVPRAKFLHHLEGHFMAVRSLVYSPYDPRVLFTASDDGNIHMYDAEGKALVGTMS
GHSSWVLCVDVSPDGAAIATGSSDRSVRLWDLSMRASVQTMSNHTDQVWGVAFRPPGGSD
ARGGRLASVSDDKSISLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaagctgggtggaatcaaatcggtggagaacgcgcacgatgattccgtctgggcggtc
acatgggtacccgcaaccgccaaccgcccaccgctcctcctaaccggttccctcgatgag
accgtcaggctctggcgatccgatgacctccttttggaccgcaccaacaccggccactgc
ctcggcgtcgcctccgtcgccgcccaccccctaggctccctcgccgcctcctcttccctc
gacagcttcgtccgcgtcttcgatgtcgattccaacgccaccgtcgccaccctcgaggcc
cctccctccgaagtctggcaaatgcgcttcgatcccaagggtgccattctagcggttgcc
ggtgggggtagtgcatcagtcaagctttgggacacttctacatgggaacttgttgccacc
ttatcaattccccgtccagaaggacccaagcccacagacaagagtggcagcaagaaattt
gtgctgtcagttgcatggagtcctgatgggaaacgacttgcctgtggttcaatggatggc
acaatttctgtttttgatgttccacgtgccaaatttttacatcaccttgaaggtcacttc
atggctgtgcggtctctggtttattctccttatgatccaagggtactgtttacagcttcg
gacgatggtaacatccacatgtatgatgcagagggtaaagctttagttgggaccatgtca
ggtcactctagttgggtattgtgtgtggatgtgagcccagatggggcggccattgccaca
ggttcaagtgatagatctgtaaggctgtgggatcttagcatgagggcatctgtgcagacg
atgagcaaccatacagaccaggtatggggtgtggcttttagaccacctggagggagtgat
gcgcgaggtggtcgtcttgctagtgtatctgatgacaagagcatttccctgtatgattat
tcctga

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