Phaseolus vulgaris (common bean): 137809415
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Entry
137809415 CDS
T03093
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137809415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137809415
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137809415
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
137809415
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
137809415
NCBI-ProteinID:
XP_068466631
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All DBs
Position
2:complement(35590443..35591294)
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AA seq
283 aa
AA seq
DB search
MERESNNNMTLPPGSVMTRSVWSYNLESEFELIRSIISLYPFISMDTEFPGVIFQSHPAF
RQPQNNYAVMKANVDSMHLIQVGLTLSDGHDNLPTFGTSNRFIWEFNFCEFDVTQHPHAP
HSIALLRRQGMDFDKNRKFGVSIVRFAELMMFSGLLCNNNIQWIAFHSTYDFGYMVKILS
QRFFYMQPFLPTNLCDFLQLVKYFFGYRVYDVKHLIRFCPNLHGGLDKVSNSLGLDNSGR
RSHHAGSDSLVTLHAFNKIKTLYFHTKFDLSKHAGVLYGLEMP
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atggaaagagaaagcaacaacaacatgactcttcctcccggttctgtgatgacaagatca
gtgtggtcttacaatcttgaatcggagttcgagttgattcgttctatcatttccttatac
cctttcatctctatggacacggagttccccggtgtcatcttccagtcgcatccagcattc
cgacaaccacaaaataactacgcagtgatgaaagctaacgtggacagtatgcacctcatt
caagttggtctcaccctttcagatggccacgacaaccttccaacctttggaacctccaac
cgcttcatttgggaattcaatttctgtgagtttgatgtgacacaacatcctcatgctcct
cactccatcgccctcctccgacgtcaaggcatggattttgacaagaatcgaaagtttgga
gtgagcattgtgcgatttgctgagttgatgatgttctcaggactcctctgcaacaataat
attcagtggattgcttttcatagtacctatgattttgggtacatggtgaagatattgagc
caacgctttttttatatgcaaccatttctacctacaaacttgtgtgactttcttcaactg
gttaaatacttctttggatacagagtatacgacgttaaacacctcatcagattttgtcca
aaccttcacggcggtttagacaaagtttctaactctctaggtttggataatagtggcaga
agaagtcatcatgcaggctctgatagcttagtcactctccatgcttttaataaaattaaa
actctctattttcatacaaagtttgacttgtcaaaacatgcaggcgttctctatggttta
gagatgccttaa
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