Phaseolus vulgaris (common bean): 137810464
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Entry
137810464 CDS
T03093
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137810464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137810464
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
137810464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_11
TPR_2
TPR_1
TPR_14
TPR_8
TPR_16
TPR_19
TPR_CcmH_CycH
TPR_17
TPR_9
TPR_12
ARM_TT21_C
BTAD
TPR_7
TPR-S
TPR_15
NRIP1_repr_4
Motif
Other DBs
NCBI-GeneID:
137810464
NCBI-ProteinID:
XP_068467825
LinkDB
All DBs
Position
2:complement(4949492..4958864)
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AA seq
1182 aa
AA seq
DB search
MESQTQRTQEEEEGAQHLFQRLQLSPDDASIHFDIGVFLWEKGGEAKEKAAQHFLQSAKL
NPKNGISFKYLGHYYASISLDTQRAIRCYQRAVVLNPDDSESGEALCNLLDQEGKDSLEV
VVCREASEMSPRAFWAFRRLGFLQVHKKKWCEAVQSLQHALRGYPTCANLWEALGLAYQR
LGRFTAAIKSYGRAIELDDTMVFALVESGNISMTLGSFSKGVEQFRQALEISPQCVPAQY
GLALGLLGLAKDCINQGAYRWGASLLEEASEVARESACFFRNFSCIWKLLADIQLAYARC
YPWIDDVLELESNKEAFSASINSWRRTCFFAARHAKFSYQRALHLSPWQANIYADIAVTS
DLITSLDKNYKQDINARQMAEKMSMGALLLESDNYEFWLALGCLSDHNALNQHALIRALQ
LNVSLAVAWGYLGKLYRKVDEKHLARQMFDRARSIDPGLALPWASMSVESCMSRELESNE
AFESCSRAVQIMPLADFQLGLTKLALLSGHLSSSQVFGAIQQAVQHSPHYPESHNLCGLV
CEARNDYKCAATFYRLARHAFNIDSQSIQNTHIRDISINLARSLSKAGNAADALQECENL
NKEGALDEEGLQVYAFSLWQLGKNDLALSVTRSLAATLSSMQKTSVATAICFICRLVYYI
CGLDAVITNIVKMPKDLLQSSKVSFVMSAIHALDGQNRLEFVVTGSRYFLKYYEEIAGMH
LLVALSKLVKNESDSLDIQSGVAHLKKAMHMFPNYSLIRNLLGYLLVSSKELNNCHVATR
CCKLEHLDLSDKNGFKSAADIHGAGAVACYTTGNSSPKFTFPTCTKQCSNHPGAIRYLQK
CYHQKPWNHDACYLLVLNYLQRAREQRFPQHLCGILNRLTQVALSNELYSGTGLLFHYRY
FQLLLCASEISLQCGNHMTCITHAKTASELVLPDDYLFFAHLLLCRVYAMKGDHPSFQKE
YMWCLELKTDYHIGWICLKLMECRYELQIDSNAIDLNFEECVKRSGKLCDMWMAAYNLVR
GMVSFQKRDLFSAEEFMKQACSSVRFESCLFLCHSVICMELVRHCNGSQFLSQAVKSLTR
VHQLSLTPLPFVSVLVAQAEGTLGSKERWNRNLHLEWFNWPSEMRPAELYFQMHLLAREL
KVGPHSTSSMESTQSPLRWVIRAIHMNPSCMRYWRVLQKLVE
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccaaacacagagaactcaggaagaagaagaaggggcgcaacatctcttccaa
cgcttgcagctgtcaccagatgacgcctccatacattttgacattggtgtgttcttatgg
gagaaaggaggagaagcgaaggaaaaagctgctcaacattttcttcaatcggccaaatta
aaccctaagaatggaatatctttcaagtatctaggccattattacgccagcatttccctt
gatactcagagagctattaggtgttaccaacgagctgttgttctcaatcccgatgattcc
gagtctggggaagctctgtgcaatttacttgaccaagaaggaaaggatagtttggaggtg
gtggtatgccgagaagcttctgaaatgtcaccgagagctttctgggctttccgaagatta
ggtttcctgcaggttcataaaaagaaatggtgtgaagctgttcagagtcttcaacatgcc
cttagaggttatcctacatgtgctaatttgtgggaagctctgggccttgcttatcagcgg
ctgggcaggtttactgcagctattaagtcttatggccgtgcaattgagttggatgatacc
atggtctttgctttggttgaaagtgggaatatctctatgactcttggttcatttagcaag
ggagttgaacaatttcgacaagctttggagatttcaccacagtgtgtgcctgcacaatat
ggacttgctttggggctgcttggtttggcaaaagactgcatcaaccaaggagcatatcga
tggggggcttcactgttagaggaagcatctgaggttgcaagggaaagtgcttgttttttc
aggaatttctcatgtatttggaaactacttgctgatattcagcttgcatatgctagatgc
tatccttggattgatgatgtcctagaattggaatctaataaggaagctttcagtgcttct
atcaattcttggaggaggacctgcttttttgctgcaagacatgcaaaattttcatatcag
cgagccttgcacttgtctccatggcaagcaaacatctatgctgacattgctgtaacttct
gatcttataacttcactagacaaaaattacaagcaagatataaatgcacggcagatggca
gagaagatgtctatgggagcacttctactggaaagtgacaattatgaattctggctggcg
ttgggatgcttgtctgatcataatgcactaaatcagcatgccttgatcagagcattacaa
ttgaatgtatccctagctgttgcttggggatatcttgggaagctatatcgtaaagttgat
gaaaagcatttggcaagacaaatgtttgatcgtgctagaagtattgatcctggccttgca
ttgccatgggcaagcatgtcggttgagtcttgtatgagtagggagcttgaatcaaatgag
gcatttgaaagctgttcacgggctgtgcagataatgcctttagctgacttccaacttggg
ctcactaagcttgctttgttgagtggacatctctcatcttcacaggtttttggagctatt
cagcaggctgttcagcattctcctcattatcctgaatcccataatttatgtgggctggtt
tgtgaggctcgaaatgattataagtgtgctgctactttttataggttagcacggcatgca
tttaacattgactcacagagtattcaaaacacacatatcagggacatatcaatcaatttg
gcccgatcactttctaaggcagggaatgcggctgatgctttgcaggaatgtgaaaattta
aataaagaaggggcacttgatgaagaaggtttacaagtatatgctttctctttgtggcaa
cttggtaaaaatgatttggctctctcggtaactagaagtcttgctgcaactctttcttct
atgcaaaagacttctgtggcaacagccatatgtttcatttgtagattagtatactacata
tgtggactggatgctgttatcactaacattgtgaaaatgccaaaggatctattgcaaagt
tcaaaagttagttttgtcatgtcagctatccatgctcttgatggacaaaatcgtcttgaa
tttgttgtcactggtagccgatatttcctcaaatattatgaagaaattgctggaatgcac
cttttagtagcacttagtaaactggtgaaaaatgagtctgatagccttgacattcagagt
ggagttgctcatctcaaaaaagctatgcacatgttccctaactatagtttgataaggaac
cttcttggctacctcttggtatccagtaaagaattaaacaattgtcacgtggcaacgagg
tgttgtaaactggaacatcttgatctttctgataaaaatggtttcaaatcagctgctgat
atccatggtgcaggagcagttgcttgctataccactggcaacagcagtccaaagttcact
tttccaacttgtacaaaacagtgttctaatcatcctggagctattagatacctgcagaag
tgctatcatcagaaaccatggaatcatgatgcctgctacttgcttgttcttaactatctt
cagagggcacgagaacaaagatttcctcagcatctttgtggcatactaaatcgtctaact
caagtagctctttcaaatgaattgtacagtgggacaggattgttgttccattatagatac
tttcaacttctactttgtgcttctgagatcagtttacaatgtgggaatcatatgacctgt
atcacccatgccaaaacagcttctgaacttgtgcttcctgatgattatctattctttgca
catctactattatgccgtgtgtatgccatgaaaggtgatcatcccagttttcaaaaggaa
tatatgtggtgtttggagctcaagacagattatcacatcggttggatctgtctcaaactt
atggaatgtcggtatgagcttcaaattgattcaaatgccatagacttgaactttgaagaa
tgtgtgaaaagaagtggaaagttgtgcgatatgtggatggcagcgtataacctagtgaga
ggcatggtttccttccagaagagggatttattctcagcagaagagttcatgaaacaggct
tgttcatcagtgcgttttgagagctgcctctttctatgtcatagtgtcatctgtatggaa
cttgtccggcactgcaatggctctcaattcctatcacaggctgttaagagtcttacacga
gttcatcaactttcacttactcccttaccttttgtttcagtactagtagcacaagctgaa
ggaacccttggttctaaagagaggtggaatagaaaccttcaccttgaatggtttaattgg
ccatcagaaatgaggcctgcggagctctactttcaaatgcatttgcttgcaagggagttg
aaagtcgggccacactctacatctagcatggagtccactcagagtcctctgagatgggtt
attcgagcaattcacatgaacccttcttgcatgcgatattggagggttttacagaagctt
gtggaatag
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