Phaseolus vulgaris (common bean): 137812768
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Entry
137812768 CDS
T03093
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137812768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137812768
03041 Spliceosome [BR:
pvu03041
]
137812768
03009 Ribosome biogenesis [BR:
pvu03009
]
137812768
03016 Transfer RNA biogenesis [BR:
pvu03016
]
137812768
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137812768
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
137812768
Spliceosome [BR:
pvu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
137812768
Complex C
U4/U6.U5 tri-SnRNP related factors
137812768
Ribosome biogenesis [BR:
pvu03009
]
Eukaryotic type
Pre-60S particles
Helicases
137812768
Transfer RNA biogenesis [BR:
pvu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
137812768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
Motif
Other DBs
NCBI-GeneID:
137812768
NCBI-ProteinID:
XP_068471064
LinkDB
All DBs
Position
2:complement(47106980..47117118)
Genome browser
AA seq
982 aa
AA seq
DB search
MENEKKESPSLGKRREPELPAAVPDTASKPKRARSAERTCVHEVAVPSGYVSNKDSELHG
TLSNPLHNGAMAKSYPFALDPFQQVSIACLERNESVLVSAHTSAGKTAVAEYAIAMSFRD
RQRVIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLSPNATCLVMTTEILRGMLYRGSE
VLKEVAWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNIHK
QPCHVVYTDFRPTPLQHYAFPIGGSGLYLVVDENEQFREDNFLKLHDTFVKQNLADGRRG
GKSGGRGGRGGNASSGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTP
EEKENVEQVFRNAVLCLNEEDRCLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEG
LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGI
CIIMIDEQMEMNNLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQF
QYEKALPDIEKRVSNLEQEVTLLDASGEAEVSEYHKLKLEIAQLEKKMMAKIIRPEIILY
FLVPGRLIKVREGGTDWGWGVVVNVVKKPSGGGYIVDTLLQCSPCSSENNSRPKPYPPRP
GEKGEMHVVPVQLPLISTLGKLRVSIPSDLRPLEARQSVLLALHELINRFPGGIPKLNPV
KDMDVRDSEIVEVVNQIEEIEKKMFAHPMHKHQDVDQIKCFERKAEVNHEIQQLKTKMRD
SQLQKFREELKNRSRVLRKLGHIDTDGVVQLKGRAACLVDTGDELLVTELMFNGTFNDLD
HHQVAALASCFIPGDKSNEQIQLRTELARPLQQLQDSARRIAEIQHECKLDINVDEYVES
TVRPYLMDVIYSWSKGANFADVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEADLE
NKFAAASESLRRGIMFANSLYL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgagaagaaggaatcaccgtcgctgggaaagcgaagagaacctgaactccca
gctgcagtcccagacaccgcttcgaagccgaaacgagctcgcagcgcagagcgcacgtgc
gtgcacgaagtcgccgttccgagcggttacgtctcgaacaaggactccgagctccacgga
actctctcgaaccctctccacaatggtgccatggcgaagtcctatcccttcgccctcgac
cccttccaacaggtctctatagcgtgtttggagcgcaacgagtctgttctcgtctccgcc
cacacctctgccggcaaaaccgccgtggccgaatacgccattgccatgtccttccgagac
cggcagcgcgtcatctacacgtccccgctcaaggccctcagcaaccagaagtaccgtgag
ctcagccaggagttcaccgacgtcgggctcatgaccggcgacgtcacactctcaccgaat
gccacgtgtctcgtcatgaccaccgagattctccgcggaatgctctaccgaggctccgaa
gtcctgaaagaagtagcgtgggttatattcgatgaaattcactacatgaaggatcgcgaa
cgaggcgttgtatgggaagagagtatagtctttctgcctccggcgattaagatggtgttt
ctctccgctactatgtcgaatgcgacggaatttgcggagtggatttgtaatatccacaag
cagccttgtcacgttgtgtacactgattttaggcctaccccgctacagcactatgcgttt
cctattggagggagtgggttgtatttggttgtggatgagaatgaacagttcagggaggac
aattttctgaagctgcatgatactttcgtgaaacagaatttggctgatgggaggagaggt
gggaaaagcggtggaagaggtggaagaggtggcaatgcttcttctggtggttctgacatt
tacaagattgttaagatgataatggaacggaaattccaacctgttatcatctttagcttc
agtagaagagagtgtgaacaacatgcaatgtctatgtctaagcttgacttcaacacccca
gaagaaaaggaaaacgtggagcaggtttttcgaaatgcagtgctatgtttgaatgaagaa
gacaggtgcttacctgctattgagctgatgttgcctcttcttcagcgagggattgctgtc
catcattctggacttcttcctgttatcaaagaattggttgagcttcttttccaggaaggt
cttgtaaaagccctatttgccactgaaacatttgccatgggtttgaatatgccagcgaaa
acagttgtattcactgctgttaagaagtgggatggtgatagtcaccgatatattggatct
ggtgaatatatacagatgagtggaagggctgggcgtcgtggcaaagatgagcggggaatc
tgtatcataatgattgatgaacagatggaaatgaataacctcaaagacatggttttgggt
aaacctgctcctttagttagtactttcaggcttagctactactcaattttaaatttgatg
agccgtgcagagggtcagttcactgctgaacacgtgatacgaaattcatttcatcaattt
caatatgaaaaggccttaccagatatagagaaaagggtgtcaaatctggagcaggaggta
accttgcttgatgcttcaggggaggctgaagtgtctgagtatcataagttaaaattggaa
atagcacagttggagaagaagatgatggcaaaaataattcggccagaaataatcctttat
tttcttgttcctggtcgattgatcaaagtcagagaaggtggaactgattggggctggggt
gttgtagttaatgttgttaagaaaccttctggtggtggttatatagttgatactttactt
caatgttcaccttgttcatctgaaaacaattcacggccaaaaccatatccaccccgccct
ggagagaaaggtgaaatgcatgtggtccctgttcaattaccattaatatctactcttggt
aaactgagggtatctataccttctgatcttcgacccctggaagcaaggcagagtgtactg
ctagctctacatgagctgataaatcgttttccaggaggtattccaaaacttaaccctgta
aaggacatggacgtacgagactctgagatagttgaagtagtcaatcaaatagaggaaatt
gagaagaaaatgtttgctcatcctatgcataagcaccaagatgtggatcaaattaaatgc
tttgagaggaaagcagaagtgaatcatgaaattcagcaattgaagacaaaaatgcgggat
tctcagctacaaaaatttcgtgaagaattaaaaaatcgctcgcgagtcttaaggaagctt
ggtcatattgatactgatggtgtagttcagttgaagggacgggcagcatgcttggttgac
actggagatgaactccttgtcactgaattgatgtttaatggtacttttaatgaccttgac
caccatcaagttgctgcccttgcaagttgtttcatcccgggagataaatcaaatgagcag
atacaactaagaaccgagcttgcaaggcctttgcaacaacttcaagatagtgcaagaagg
atagcagaaattcaacatgaatgcaaattggatataaatgtggatgagtatgttgaatca
acagtaaggccatacttgatggatgtgatatactcctggtcaaagggagcaaattttgcc
gatgttatacaaatgactgatatctttgaggggagtatcattcggagtgctagaaggctt
gatgagtttttgaaccagttgcgtgctgctgcaaatgcagttggagaggctgacttggag
aataaatttgcagctgcaagcgaaagtcttcgacgaggcattatgtttgcaaattctctg
tatttgtga
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