Phaseolus vulgaris (common bean): 137812985
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Entry
137812985 CDS
T03093
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03013
Nucleocytoplasmic transport
pvu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137812985
09122 Translation
03013 Nucleocytoplasmic transport
137812985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137812985
03041 Spliceosome [BR:
pvu03041
]
137812985
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
137812985
Spliceosome [BR:
pvu03041
]
Complex C
Other components
EJC/TREX
137812985
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137812985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
LIM_bind
Motif
Other DBs
NCBI-GeneID:
137812985
NCBI-ProteinID:
XP_068471353
LinkDB
All DBs
Position
2:complement(48926292..48950643)
Genome browser
AA seq
1864 aa
AA seq
DB search
MSLPPIECLYVTEDCVREWRTANPALKVSQAVPMLRFLYELCWTMVRGELPFPKCKVALD
SVIFSEQASNDQIASNFADIVTQMAQDHTMPGDSRSRLIKLARWLVESEMVPVRLLQERC
EEEFLGEAELIKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEAP
TQKSSTATIGIIKSLIGHFDLDPNRVFDIVLECFELQPDDDVFIELIPIFPKSHASQILG
FKFQYYQRMEVGSSVPFGLYRLTALLVKQDFIDLDSIYAHLLPRDDEAFEHYNTFSSKRL
DEANKIGRINLAATGKDLMDDEKQGDVSIDLFAALDLETEATEERTTELQSSQTLGLLTG
FLSVDDWYHAHLLFERLSALNAVEHIQICDSLFRLIQKSISSAYDVVRLSHLQNPGSSSG
GADVMDVDNSSGCNSFIDLPKELFQMLSCTGPYLYRDTVLLQKVCRVLRGYYLSALELVS
RGNGALNPQLHVPGNPNLHLKEAKLRVEDALGACVLPSLQLIPANPAVGQEIWELMSLLP
YEVRYRLYGEWEKDEERIPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHASPM
TVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLALGGRDKLKDDGLNLSD
WLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENLT
EEQLDAMAGSDTLRYQATSFGVTRNNKALIKSTSRLRDALLPKDEPKLAIPLLLLLAQHR
SLAVVNADAPYIKMVSEQFDRCHGTLLQYVEFLGSAITPSSNYGILIPSLNDLVHLYHLD
PEVAFLIYRPVMRLFKSQRNPDVCWPLDDKHAASDGSSNFESDPLGDSGSMVLNFGSAQN
PISWSYLLDTVKTMLPPKAWNSLSPDLYATFWGLTLYDLYVPKNRYESEIAKLHANLKSL
EELSDNSSSAITKRKKEKERIQESLDRLISELHKHEENVASVHSRLSREKDRWLSSCPDT
LKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMIC
CCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIK
VHWKWSQRITRLLIQCLESSEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKSDE
REDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAPSGTKSSAGNPSTVHSGMNLNV
SQTESASGKHVDSGNTVKDQVIRTKTTDGKSERTESMTATKSDSGHTKVKTGAMVNGFDG
QTSSISSSIQSGMSKSMENSKQVEELINRASDDHGTRTAESRASAKRSVPTGSLSKPSKQ
DPLKEDSRSGKPVARTSGSLSSDKDLHSGTTNVTSSVSANGNTITGSTKGSNAPVRISLD
GPGNESKAEVGVSKSSDIRASVVKDDGNDTADLTRGSSSRVVHSPRHENTGVASKSNEKV
QKRASSAEEPDRLGKRRKGDVELRDFESEVRFSDRDKLMDPRFADDKLGPEEHGLYRAGD
KSLERPKDKGNERYERDHRERLDRVDKSRGDDSVAEKPRDRSIERYGRERSVERMQERGS
ERSFNRPPEKAKDERSKDDRNKLRYSDASVEKSHADDRFHGQSLPPPPPLPPNMVPQSVG
AGRRDEDADRRYGATRHSQRLSPRHEEKERRRSEETVVSQDDAKRRKEDDFRERKREEIK
VEEREREREKANVLKEDLDLNAASKRRKLKREHLSTGEPGEYSPVAPPPPPTGIGMPLGY
DGRDRGDRKGPVIQHPNYIDEPNIRIHGKEVASKLNRRDSDPLYDREWDDEKRQRADQKR
RHRK
NT seq
5595 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttccacccatagagtgtctgtacgtaacagaggactgtgttcgcgaatggagg
actgccaaccctgccctcaaggtctcccaagctgtccccatgcttcgcttcctctacgag
ctctgttggactatggttaggggtgaactgccgtttcccaagtgtaaagttgcgttggat
tctgtcatattttcagaacaagcttccaatgaccaaatagcttcgaattttgctgatata
gtgacccagatggctcaagatcatacaatgcctggagattcccgttctcgtctcatcaag
ctggcaagatggcttgtggaatctgaaatggttccagttaggctacttcaagaacgttgt
gaggaagaattcttgggggaggctgaattgatcaaaattaaggctcaggagttgaagggt
aaagaggtcagagttaatacccgacttctctatcagcaaaccaaattcaaccttctcaga
gaagagagtgagggctatgcaaagctggtgactcttctttgccgggactccgaagcacct
acacaaaaatcatccacagcaaccattggcattattaagtcattaattggccattttgat
ttggatccaaatcgtgtttttgatattgtcctagagtgttttgaactgcagcctgatgat
gatgtgtttatagagttgattcctatatttccaaagtctcacgcgtcacagattcttggg
tttaaatttcaatattatcaacgcatggaagttggcagttctgttccatttgggctatat
agactcacagccttgctggtgaagcaagattttattgatcttgatagcatttacgctcat
ctacttcccagagatgatgaggcatttgagcattacaatactttctcttccaagcgactt
gatgaggctaataagattggaagaataaaccttgctgcaactggaaaagatctaatggat
gatgagaaacagggggatgtcagtatagatctctttgctgccttagaccttgaaacagaa
gcaactgaagagcgaacaactgagcttcaaagcagtcagactctgggcttgcttactggc
tttctttcggtggatgactggtatcatgcacacctattatttgaacgtctttcagcactc
aatgctgtggaacatattcaaatatgtgacagtttgtttaggcttattcagaagtccatt
tcttcagcatatgatgttgtccgtctgtcacatcttcaaaatcctggatcatcatcagga
ggcgctgatgttatggatgtcgataactcttcaggatgcaattctttcatagatcttcct
aaggaactttttcagatgctttcttgtactggaccttatctctaccgtgatactgtattg
ttgcagaaggtttgtagggtcttgagaggttattatctttctgctctagagcttgtaagt
cgtggcaatggtgccttgaatcctcaattacatgttcctggaaaccctaacctacatctt
aaggaggcaaagctaagggtagaggatgctttaggggcatgtgtattaccttctctgcag
ttaattcctgccaatccagctgttgggcaggaaatatgggaactaatgagtcttcttcct
tacgaggtgcgatatcgattgtatggtgaatgggaaaaagatgaagagcgcattcctatg
cttttagctgcaagacaaactgccaagttggacactagacgtattttgaaacggctggca
aaggaaaatttgaagcagctgggtcggatggttgcaaaattagctcatgccagccctatg
actgtcctccgaacaattgttcatcagattgaggcttacagagacatgattactcctgta
gtggatgcatttaagtacttgactcagctcgagtatgatatattggaatatgttgtgatt
gaacgattagcacttggtggacgtgataagttaaaggatgatggccttaatttgtcagat
tggcttcaatctctagcctcgttttggggccatctgtgtaagaagtacccatcaatggaa
ttacggggccttttccagtatcttgtgaatcagttaaaaaaggggcaaggaattgagctt
gttctactgcaggagcttattcaacaaatggcaaatgtccagtacacagagaacttgact
gaggaacagcttgatgcaatggcagggagtgacactctcagatatcaagcaacttctttt
ggtgtaactcggaataataaggcattgataaagtcaactagcagacttagggacgcatta
cttccaaaagatgaaccaaagttggcaatccccctcttacttcttcttgctcagcatcgt
tctctagctgttgtaaatgcagatgcaccctacattaagatggttagtgagcagttcgat
agatgtcatggaactctccttcaatacgtggaatttcttggcagtgcaatcacaccatca
tcaaattatggcatccttattccctcgctcaatgacctggtccacctttaccacctggac
cctgaggttgctttcttgatatatcgtcccgtaatgaggcttttcaagtctcagagaaat
cctgatgtttgctggcccttggatgataaacatgctgcaagtgatggatcttctaacttt
gaatctgatcctctgggtgattctggtagtatggttctaaattttggctctgctcaaaat
cctataagttggtcgtatcttcttgatactgttaaaaccatgttgcctccaaaagcatgg
aatagcttatctcccgatctttatgcaacattttggggtcttacattatatgatctgtat
gtcccaaaaaatcgatatgagtcagaaatagccaagctgcatgcaaatctaaaatctttg
gaggagctttctgataattcaagctcagcaattacaaagaggaagaaagaaaaggaaaga
attcaagaatctcttgatcgtctgattagtgaactgcataaacacgaggagaatgttgca
tctgttcatagtcgtctttctcgtgaaaaagacagatggttaagttcctgtcctgacacc
ttgaagatcaacatggagtttcttcagcgctgtatttttccacgctgtactttcagtatg
ccagatgctgtttattgtgctatgtttgtccacacacttcattcccttggaacccccttt
ttcaacacagtcaatcacatagatgttttgatttgtaaaaccctacaacctatgatatgc
tgctgcactgaatatgaggcaggcaggcttggtaggtttctgtatgagactttgaagatt
gcttactattggaagagtgatgaatctatttatgaacgtgagtgtggaaacatgccaggc
tttgccgtttactatagatatccaaatagccaacgagttacatacggccagttcattaag
gtacactggaagtggagtcagagaatcacacgtttactaattcagtgtctggaatctagc
gagtacatggaaattaggaatgctctcataatgttgacaaaaatttctagtgttttccct
gttacccggaagagtgggataaaccttgagaagcgagtagctaagattaaaagtgatgaa
agagaggatcttaaggtgttggcaactggtgttgcagcagcattggctgctaggaagcct
tcttgggttactgatgaagaatttggtatgggttatcttgagttgaaacctgcaccatct
gggactaaatcttcagctggaaatccctcaactgtacatagtgggatgaatctcaatgtt
tcacaaactgaatctgccagtggaaaacatgtggactctggaaacacagtcaaagatcag
gtaataagaacaaaaactaccgatggcaagtctgaaagaacggaaagcatgactgcgaca
aaatctgattctggccatacaaaagtcaagaccggtgcaatggtaaatggatttgatggc
caaacatcctcgatctcatcttctatacaatctgggatgtcaaaatctatggaaaactca
aagcaagtggaagaattgataaatagagcatcagatgatcatggaacaagaactgctgag
tcaagagcctcagcaaagcgttcagtgcctactggttcactttcaaaaccatcaaaacaa
gaccctttaaaagaagatagtaggtctggaaaacctgttgctagaacttcaggttccttg
agtagtgacaaggatctacacagtggaactaccaatgtaacttcttcagtcagtgctaat
ggtaacaccattactggttctactaaaggttcaaatgcaccagtaaggatttcattggat
ggtcctggtaatgagtcaaaggccgaggttggagtttccaagtcttctgatattagggca
tctgtggtgaaggatgatggaaatgatactgctgatttaactagaggatcctcttcacgc
gtagttcattcccccaggcatgaaaacacaggagttgcttcaaaatctaatgaaaaagtt
cagaagagagccagttctgctgaagaaccagacagactaggtaaacgacggaaaggagat
gttgagctaagagattttgaaagtgaagttcgattctctgatagagataagttgatggat
cctcgctttgctgatgacaaattgggaccagaggaacatggtctgtacagagcaggtgat
aagtcactggaacgtccaaaagacaagggcaatgaaagatatgagagggaccacagggaa
agattagaccgcgtagacaagtctcggggtgatgactctgtagctgaaaaacctagggat
aggtcaattgaaagatatggaagagaacgatccgttgagagaatgcaagagaggggtagt
gagaggagttttaatagaccacctgagaaagcaaaggatgaaagaagcaaggatgatagg
aacaaattacgttacagtgatgcatcagtagaaaaatctcatgctgatgatcgcttccat
ggtcaaagcttgcctccaccgccccctttacctcctaatatggttcctcaatccgtagga
gctggtaggcgtgatgaagatgctgataggaggtatggagcaacgaggcactctcaaaga
ctttctccaaggcatgaagaaaaggaacggagacgatcggaagagactgtggtttctcag
gatgatgccaaacgccgaaaagaagatgattttcgagaacgaaaacgtgaagagattaag
gttgaagagagggagagagaaagagagaaagcaaatgttctgaaggaagatttggattta
aatgccgcatccaagaggcggaaacttaagagggagcatctatcaactggtgaacctggg
gagtactcacctgtagctcctccacctcctcccactggtattggtatgccattggggtat
gatggaagggacaggggagacagaaagggacccgtcatccagcatccaaactacatagat
gaaccaaatatcaggattcacggtaaagaggtggccagcaagttgaatcgccgtgattca
gatcccttgtatgatcgtgaatgggatgatgagaagagacaaagagctgatcaaaagcga
aggcaccggaagtag
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integrated database retrieval system
