Phaseolus vulgaris (common bean): 137813004
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Entry
137813004 CDS
T03093
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137813004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137813004
03012 Translation factors [BR:
pvu03012
]
137813004
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137813004
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137813004
Translation factors [BR:
pvu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137813004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_16
nSTAND3
T2SSE
NACHT
ATPase
AAA_19
Dicer_dimer
PhoH
ABC_tran
Motif
Other DBs
NCBI-GeneID:
137813004
NCBI-ProteinID:
XP_068471382
LinkDB
All DBs
Position
2:49094803..49105872
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AA seq
1201 aa
AA seq
DB search
MQKLCVCAVQPLSLSAVTTTVPMAYSGIVQGFIRFKTMTRLRCTPLRPSFPSISATPFHR
TAIRLRSSSTTLQVVNVTRPRTTARKGTVALPFLHQRSSSYGRFAYQDESSDDSDVEFAS
PPSHSQQVGDSTLENIDEWRWKLTMLMRSKDEQEVVSREKKDRRDFEQLSTLATRMGLYS
RQYARVLVFSKAPLPNYRPDLDDKRPQREVVLPFGIHKEVDAHLHAHLSQKATNSWSSLN
SLHKSSDPRSIPANEGMHEQPEPMTHNSVVKQKILQKRSLQLLHRQQDWQESPEGQKMLE
FRRSLPAFKEKDAFLRVISENQVVVVSGETGCGKTTQLPQYILESETEAARGAVCNIICT
QPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDGNL
KGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPDLRLILMSATLNAELFSSYFNGAPTMH
IPGFTFPVRAHFLEEILERTGHRLTPYNQIDDYGQEKTWKMQKQAQAFRKRKSQIASAVE
DALEVADFKRYSLRTQDSLSCWCPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINS
LKDQLQAHPLLGDQSRVLILACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITIND
VVFVVDSGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDA
FADYQMPELLRTPLQSLCLQIKTLQLGSISEFLSRALQPPEPLSVENAVEYLKIIGALDG
NENLTVLGQKLAMLPVEPKLGKMLILGTIFKCLDPIMTVVAGLSVRDPFVMPSDKKDLAE
SAKSQFAGREYSDHLALVRAFEGWKDAETQQAGYEYCWRNFLSSQTLKAIESLRKQFLYL
LKDIGLVNNTPETYNAWSREVHLIRAVICAGLFPGISSVVNKDKSIALKTMEDGQVLLYS
SSVNGCVPRIPYPWLVFNEKVKVNSVFLRDSSGISDSALLLFGGNVSRGGLDGHLKMLGG
YLEFFMKPELAKTYLSLKTELEELIQKKLLDPTQETQSHSQLLSAVRLLVSEDRCDGRFV
FGRQVPSQVKKETNAKSGVEGENFKNKLQTFLNRAGHESPTYKTKQLNNYQFRSTVIFNG
LNFAGQPCSSKKLAEKSAAAEALLWLKGDSHSSDAIDHASVLLKKSNKKSRKKSFSGAKW
S
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagctctgtgtctgcgcagtgcaacctctctccctctcagccgtgaccaccacc
gtgccgatggcatattccggcatagttcagggcttcatcagattcaaaaccatgacgcgg
cttcgctgcactcctctcagaccttcttttccatccatttccgccactccttttcaccgc
accgctattcgcctccgctcctcctccaccacacttcaagtcgtcaacgtcacgcgcccg
aggaccaccgcgcgcaaggggaccgttgcgttaccgtttttgcaccagcgcagctccagc
tatggccgttttgcgtaccaggacgagtccagtgacgattccgatgtcgaattcgcgtct
cccccctctcacagccaacaagtgggtgactcgacgctcgagaacattgacgagtggaga
tggaagctgaccatgcttatgcgctccaaagacgaacaagaagtggtgtcaagagagaag
aaggaccgtcgcgatttcgagcagctttccactttagctaccaggatgggtttgtatagc
cggcaatatgcaagagttcttgtgtttagcaaggcgcctttgccaaattaccgccctgat
ttggatgataaacgcccgcagagagaggtagtcttaccatttggcattcataaagaagta
gacgcccatctccatgcccatctttcacagaaggctacaaactcgtggagttctttgaat
tcattgcacaaatcaagtgatcctagaagcattccagccaatgaaggaatgcatgaacag
ccagagcccatgactcataatagtgttgtcaagcagaaaatccttcaaaaaagaagtttg
caactgcttcatcggcaacaggattggcaggagtctcctgaagggcaaaagatgcttgaa
tttcgtagaagtcttcccgctttcaaagagaaggatgcatttttgagagtgatttcagag
aatcaggtcgttgttgtctcaggtgaaactggttgtggtaagaccacacaacttcctcaa
tacatattagaatctgagactgaggctgcacgtggagctgtatgtaacataatttgtact
cagcccagaagaatatctgctatgtctgtttccgaaagagttgcagcagaacgaggggag
aagttgggagaatctgttggatacaaagttcgcttggagggtatgaaagggagagatacc
cgtcttcttttttgcaccacaggtgtattattgcggagactgcttgtggatgggaattta
aaaggtgtaactcatgttattgttgatgaaattcatgaacgtggaatgaatgaagatttt
cttctcattgtcctgaaggaacttcttcctcgtcgtcctgatttgagattaattttgatg
agtgcaaccttaaatgctgagcttttttcttcttactttaatggtgctccgactatgcat
attcctggttttacatttccagttcgagcacattttcttgaggaaattctggaaagaact
ggacatcggttgacgccttataatcaaattgatgactatggtcaagaaaaaacatggaaa
atgcagaaacaagctcaagctttcaggaaaagaaagagccagattgcttctgctgttgag
gatgctttggaagttgcagactttaagagatatagcctacgcacccaagattcattgtcc
tgttggtgccctgactcaattggttttaaccttattgaacatgtgctttgtcacattgtt
aagaatgaaaggccgggagctgttttggtttttatgactggttgggatgatataaactct
ttgaaggatcaacttcaagctcatcctttgttgggtgatcagagccgagtattgattctt
gcatgccatggctccatggccagctctgagcagaggttgatatttgaaaatcctgaagga
ggggtgaggaaaattgttctggcaactaacatggcggagactagtattaccatcaatgat
gttgtctttgtggttgactctggaaaagcaaaagaaacatcttatgatgcattaaataac
actccttgtttgcttccatcttggatctcaaaagctgctgcccggcagagaagaggaagg
gctggtcgtgttcagcctggcgaatgctaccatctttatcccagatgtgtttatgatgct
tttgctgattatcaaatgccagagcttttgagaacacctttgcagtccttgtgtctgcaa
atcaaaactctacaacttggaagcatctctgagtttttatctagagctctacagccacca
gagcctctgtcggttgagaatgctgttgaatatttgaagattatcggggccttagatggg
aatgaaaatttaacagttttagggcaaaaattggcaatgcttcctgtagaacccaaactt
ggcaagatgctcattttaggaaccatcttcaagtgtttggatcctataatgactgttgtt
gctggtctaagtgtaagagatccatttgtgatgccatctgacaagaaggatcttgcagag
tctgccaaatcccaatttgctggtcgtgagtatagtgatcatcttgcacttgtccgggct
tttgagggttggaaagatgctgagacacagcaagctggttatgagtactgttggcgaaat
tttctttcttctcaaacacttaaggccattgagtctcttcgaaagcaattcctttacttg
ctcaaagatattggtctggtcaataacacgcctgaaacctacaatgcatggagtcgtgaa
gtgcatctcatccgagcagtcatctgtgcgggtttgtttcccggaatatcttctgttgtg
aacaaagataagtcaatagcactgaagacaatggaggatggtcaagttcttttgtattct
agctctgtaaatggctgtgtaccccgaattccatacccatggttagtgtttaatgaaaag
gtgaaagtgaattcagtattcctcagagattcatctggtatatctgattcggcacttctc
ttatttggtgggaatgtatccagaggtggacttgatggtcacctgaaaatgttgggaggg
tatttggaatttttcatgaaaccagaattagccaagacttacttaagcttaaagacggaa
cttgaagaattgatacagaaaaagcttctggatcccacgcaggaaacacaatcgcatagt
cagcttctttcagctgttagattgttggtttcagaggaccgttgtgatggtaggtttgtc
tttggtcgccaagtcccatcacaagtaaagaaggaaacaaacgccaaaagtggagtcgag
ggtgaaaattttaaaaataaacttcaaacatttcttaacagggctggacatgaatcacca
acttacaaaacaaagcagctgaataactaccaattccggtctactgtcatatttaatggg
ttgaattttgctggtcagccatgcagcagcaagaaattagcagaaaaatctgctgctgct
gaggctcttctatggttaaaaggggatagccattcatctgatgctattgaccatgcatca
gttcttttgaagaagagcaacaagaaaagtaggaagaaatcgtttagtggcgctaaatgg
agttga
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