Phaseolus vulgaris (common bean): 137815271
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Entry
137815271 CDS
T03093
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137815271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvu03041
]
137815271
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137815271
Spliceosome [BR:
pvu03041
]
Complex C
Other components
Step II factors
137815271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
ABC_tran
Cas3-like_C_2
nSTAND3
AAA_16
T2SSE
AAA_30
TsaE
GIPC1_GH2
Sigma54_activ_2
PhoH
Helicase_RecD
SLFN-g3_helicase
SRP54
Motif
Other DBs
NCBI-GeneID:
137815271
NCBI-ProteinID:
XP_068474490
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All DBs
Position
1:complement(51062689..51066823)
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AA seq
912 aa
AA seq
DB search
MAAIDGFNALQHLSLLSKVCAELESHTGAADKVLAEFIIHLASSSDNLNHFVDKLKDNGA
HFPDYLVRTLFTVVHAVLTPSKTESETREEGSGSSSWRPHKKRISSPEKREVKQFTAAGN
LNFPDDEEEEEGDGLLHQEEGDDEDLEIELNDDAPAFLQGKKTKHSMDMSPLKIFTNPEG
SLLRSAAIQSALAKERREVREQLHRSMLDSIPKDLNRPWEDPMPEKGERHLAYELRGVGL
SAFDMPEWKENCEKTISFGPKSKFSIPEQRQSLPIYKLKNELIQAVHDNQVLVVIGETGS
GKTTQLTQYLAEAGYTTKGKIGCTQPRRAAAVSVAKRVAEEFGCRLGEEVGFAIRFEDCT
GSDTVIKYMTDGMLLREMLVDENLSRYSVIMLDEAHERTVYTDVLFGLLKLLLKIRPELR
LIVTSATLDAEKFSGYFFDCNIFTIPGRTFPVEILYAKQPESDYLDSSLLTVLQIHLTES
KGDILLFLTGQEEIDFACQSLFERMKGLGKNVPELIILPVYSALPSEMQSRIFEPTPPGK
RKVVVATNIAEASLTIDGLSYVVDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAG
RTGPGKCYRLYTESAYRNEMSPTTVPEIQRINLATTTLNMKAMGITDLLAFDFMDSPSPQ
ALVSAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMI
QTGNIFYRPREKQGQADQKRAKFLQPEGDHLTLLAVYEAWKAKNFSGPWCSENFVQSRSL
RRVQDVRKQLLTIMDRYKLDVASAGNKLTKVTKAIAAGFFFHAARKDPQEGYRTLVNNQC
VYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTAIDPKWLVQLAPRFFKAVDPTKTSKR
KRQERIQPLYGF
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgatcgatggattcaacgcgcttcaacacttgtcgctcctctccaaggtctgc
gccgagctcgaatcccacaccggcgccgccgacaaggtcctcgccgagttcatcatccac
ttggcaagctcttccgacaaccttaaccacttcgtcgacaaactcaaggacaacggtgcc
cattttccggattaccttgtccgaacgcttttcaccgttgttcatgcagttcttacaccc
tctaagacagagtctgaaaccagagaagagggcagtggcagttcttcgtggaggcctcac
aagaagagaatctcttctccggagaaacgggaagtaaaacagttcactgccgccggaaac
ttgaattttccagatgatgaggaggaggaggagggagatggattgctacaccaagaagaa
ggtgacgatgaggatcttgagattgagttgaatgatgatgcacctgctttcttgcagggg
aaaaaaaccaaacactcaatggacatgtctcctcttaagattttcacgaatccagaaggt
tctctgcttcgcagcgcggcgattcagtctgcgcttgctaaggaacgaagggaagtgcga
gaacagctgcatcgttcaatgctggattcaattccaaaggatctgaatcgcccttgggaa
gatcctatgccggagaaaggtgaaagacaccttgcttacgagcttaggggggtgggttta
tctgcctttgacatgccggagtggaaggagaactgcgaaaaaaccatttcgtttgggccg
aaatcaaagttttctattccggagcagaggcagagtttgccaatttataaactgaaaaat
gaattgattcaggctgtgcatgataatcaggtgttggtggtgatcggagaaactggttct
gggaagactactcagcttacccagtatcttgccgaagcggggtacaccacaaaggggaaa
attgggtgtactcaaccacggagagccgctgcagtgtctgttgcaaagagggttgcagaa
gagttcggttgtcgattgggggaggaagttggtttcgccattcggtttgaggattgcact
ggatcggatactgtcatcaagtacatgactgatggtatgcttcttagggagatgttggtg
gatgagaatctgtcacggtattcagttattatgcttgatgaagcccatgaaagaactgtt
tatactgatgttctttttggacttctgaagctgctactgaagattaggcctgaattaaga
ttgatcgtcacgtctgctactcttgatgctgagaagttttcagggtatttctttgactgt
aacatctttacaatacctgggagaacttttcctgtggagatactttatgctaaacagcct
gagagtgattacttggattcatctttgctcactgttttgcagatccacttgacagaatct
aaaggagacattcttctcttcttaactggccaagaagagattgattttgcatgccaatct
ctttttgagagaatgaagggattgggtaagaatgttccagagctcatcattttacctgtt
tatagtgctcttcctagtgaaatgcagtctaggatatttgaacctactccacctgggaaa
aggaaagtggttgtggctacaaacattgctgaagcttctttgaccattgatggtttatct
tatgtagttgatcctggatttgccaagcagaatgtttataacccgaagcaaggccttgat
tctttggtgataactccaatttcacaagcatcagccaaacaaagagcagggcgtgcaggg
cgtacaggacctgggaagtgttatcgtctatatactgagagtgcatataggaatgagatg
tctcccactacagttccagagattcaaaggataaacctagcaacaactactcttaatatg
aaagctatggggataaccgatctattggcctttgattttatggattcaccttcacctcag
gcgcttgtttctgctatggagcagctttacagtcttggagcattggatgaagagggcctg
ttaaccaaactagggaggaaaatggcagaatttcctttggatccacctttgtccaagatg
ctacttgccagtgtggatcttggatgcagtgatgagattttgaccataattgccatgatc
caaaccggaaatattttttacaggccaagggaaaagcaaggccaagcagatcagaagagg
gcaaagtttttacagccagagggtgaccatcttactctacttgctgtttatgaagcttgg
aaagctaagaatttttcagggccgtggtgttctgagaactttgttcaatcccgatcgttg
agaagagtgcaggatgttagaaaacagcttctcaccatcatggataggtacaaattagat
gttgcgagtgctggaaataagttaaccaaagtcacgaaggctattgctgcaggattcttt
ttccatgctgctagaaaggaccctcaggaaggttacagaaccctggttaacaaccagtgt
gtatatatccatccaagctcagctttgttccagagacaaccagactgggtaatctaccac
gagcttgtgatgacaacgaaggaatatatgcgtgaggtcactgccatagaccctaaatgg
ctagttcaactggctccaagatttttcaaagctgtagatcccacaaagacgagcaagcga
aagcgtcaagaacgtatacaaccactttatggcttctga
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