Phaseolus vulgaris (common bean): 137816511
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Entry
137816511 CDS
T03093
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03015
mRNA surveillance pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137816511
09123 Folding, sorting and degradation
03018 RNA degradation
137816511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137816511
03041 Spliceosome [BR:
pvu03041
]
137816511
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
137816511
mRNA cycle factors
Stress granule specific factors
137816511
Spliceosome [BR:
pvu03041
]
Complex C
Other components
Complex C specific factors
137816511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_3
RRM_MARF1
RRM_7
RRM_RdRP1_2
RBD_DGKtheta
SET1_RBD
Motif
Other DBs
NCBI-GeneID:
137816511
NCBI-ProteinID:
XP_068475777
LinkDB
All DBs
Position
1:complement(1965730..1970713)
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AA seq
651 aa
AA seq
DB search
MAQIQAQQHQSPVSAPPNGVAPAPNANQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVS
VRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTA
NIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKL
NGMLINDKQVYVGHFLRKQDRDNALSKTKFNNVYVKNLSDSTTDEELKKVFGEYGTITSA
VVMRDADGKSKCFGFVNFENPDDAAKAVEGLNGKKFDEKEWYVGKAQKKSERELELKGRF
EQSIKEAADKFQGVNLYLKNLDDTLSDENLRDMFAEYGTISSYKVMRDPNGISRGSGFVA
FSTPEEASRALAEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMP
LYPPGAPGIGQQFMYGQGPPTMIPPQAGFGYQQQLVPGMRPGGGPMPSFFVPLVQQGQQG
QRPGGRRGAGPVQQPQQPLPMMQQQMLPRGRVYRYPPGRNMQDVPLQGVAGGMMSVPYDM
GGLPIRDSVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEM
DQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQTNPADQLASLSLNDNLVS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaggcacagcagcaccagagtccagtctcggctcctccaaatggcgtc
gctccggcgcccaacgcgaaccagttcgtgacgacctcgctgtacgtcggcgatcttgac
cagaatgtcaacgactcgcagctctacgatctgttcaaccaggtcgggcaagtcgtttct
gttcgcgtctgcagggacctgaccactcgtcgttcactcggttacggttatgtcaattac
agtaaccctcaggatgcggcgagggcattggatgtgctgaatttcactccactgaacaac
aaatctattaggatcatgtattctcatcgggatcctagtattcggaagagtggcactgcg
aatatttttatcaagaatttggataaggctattgaccacaaggccttacatgatactttt
tcttcttttggacacattctttcttgcaaaatagcaacagatgcttctggcctgtctaaa
ggttatggttttgttcaatttgacaatgaagaggctgcacagaatgctatagacaagtta
aatggcatgctgatcaatgataagcaggtctatgtaggacatttcctgcgaaagcaggat
agagataatgctctcagtaagacaaaattcaataatgtctatgtgaaaaacctatcagat
tcaaccacagatgaagagttgaagaaagtttttggagaatatggtaccattactagtgct
gtagtaatgagagatgcggatggtaaatctaagtgttttggtttcgtcaattttgaaaac
ccagacgatgctgccaaagctgttgaggggcttaatgggaagaaatttgatgagaaggag
tggtatgttggaaaagcccagaaaaaatctgagcgtgaacttgaattgaaaggaagattt
gagcagagtataaaggaagctgctgacaaatttcagggtgtgaacttgtatctcaagaac
ttggatgatacgctcagtgatgaaaatcttagagatatgtttgctgagtatggtacaata
tcttcgtacaaggtaatgcgtgacccaaacggaattagtagaggatcgggatttgttgca
ttttcaactcctgaagaggcatctcgtgctcttgctgagatgaatggtaaaatgattgct
ggaaaacctctgtatgttgccctggcacagagaaaagaagagagaagagcaaggttacag
gcacaattttcacagatgaggcctgttgcaattacgccatctgtggcaccccgaatgcct
ctctatcctcctggtgctcctggtataggacaacaatttatgtatgggcaaggacccccc
accatgattccaccccaagctggatttggttaccagcagcaactagttcctggaatgagg
cccggtggtggtccaatgcctagcttctttgttcctctggttcagcaggggcaacaaggg
cagcgtccaggcggtcgccgtggagcaggtcctgtgcaacaacctcaacagccgttgcca
atgatgcagcagcagatgcttccaaggggacgagtctatcgttaccctcctggccgcaac
atgcaagatgtcccacttcaaggtgtagctggtgggatgatgtcagtcccctatgacatg
gggggtctcccaatccgtgattctgtgggacagccaatgcctattcaagctttggctact
gcccttgccaatgctccacctgaacagcagaggactatgctgggtgaagctttatacccg
cttgtggatcagctggaacatgacgcagcagcaaaggtcactggcatgcttttggagatg
gatcagcctgaagtccttcatctgattgagtcaccggatgctctgaaggccaaagttgct
gaagccatggatgtactgagaaatgttgctcaacagcaaaccaaccctgctgatcaactt
gcctctctctctctcaatgacaatctcgtgtcttag
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