Phaseolus vulgaris (common bean): 137816902
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Entry
137816902 CDS
T03093
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137816902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvu03041
]
137816902
Spliceosome [BR:
pvu03041
]
Complex B
Other components
Prp19-related factors
137816902
Complex C
137816902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
RRM_occluded
zf-CCCH
zf-CCCH_10
RRM_YTH1
zf-CCCH_4
RRM_3
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
137816902
NCBI-ProteinID:
XP_068476174
LinkDB
All DBs
Position
Unknown
AA seq
480 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAE
EHDRKARAGIDYESSYGKVHPNDTIMKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMATLEAPEDESIKTLYVGGLDARVT
EQDLRDNFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQNSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPLPPQQERSYYP
SMDPQRMGALIPSQDGPPGGPSGSGENKLSLEKQQMQHYPHSLMPPPPGQYHHQYYPPYG
YMPPATPYHHQYPPPYNAAGPPPQPPAASHPYQHSMQPGSGQAATAPAETGTSTSGPQQQ
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacaggttgctcagagaccacgaagccgacggttgggagcgctccgattttccg
attatctgcgaatcctgcctcggcgacagcccatacgttcgaatgaccagagcagagtat
gacaaggagtgcaagatatgtacacggccattcactgtttttcgatggagacctggtcga
gatgcaagatataagaaaactgagatctgtcaaacatgcagtaaattgaaaaatgtctgt
caagtgtgccttctggatcttgaatacggactaccagttcaagttcgggacactgctctg
agtattgattccaatgatgccataccaaagagcgatgttaatagggagtattttgctgaa
gagcacgaccgtaaggctagagctggtatagattatgaatcctcttacggtaaagtacac
ccaaatgatactatcatgaagcttcaaaggacaacaccgtattacaagagaaaccgagca
catgtttgcagtttctacataaggggtgagtgtaccagaggagctgagtgcccttatcga
catgagatgccagttactggggagttgtctcaacaaaatattaaagatcgttattatgga
gtgaatgatccagtggctttgaagctacttggcaaggcaggagagatggccactctggag
gctcctgaggatgagagcattaaaacactttatgttggtggacttgatgctagggtcacg
gagcaggatttacgggataacttctatgcccatggagaaattgaatccatcaaaatggtt
ctccaacgggcttgtgcttttgtaacatatacaaccagggaaggtgcagaaaaagcagca
gaagaactctccaacaaattggttattaagggcctaaggctaaagctgatgtggggcagg
cctcagaactcaaaacctgagtctgacggttctgatcaagcaaggcagcaggcttctgta
gctcacagtggattgttgcctcgagcagttatatcacagcagcagaaccaggaccaaacc
caaggaatgctttactataacaatccactacctcctcagcaggaaagaagctactaccca
tcaatggaccctcaaagaatgggtgctcttattccatcccaagatggtcctcctggtggg
ccttctgggtcaggggagaacaagcttagtttggaaaagcagcagatgcaacattatccc
cactcattgatgcctcctccacctggtcaatatcatcatcagtattatcctccatatggt
tatatgcctccagctaccccttatcatcatcagtatccacctccatacaatgctgctggg
cctccaccacagccaccagctgcaagtcatccttatcagcattctatgcagccagggtct
ggacaggctgcaactgccccagctgaaactggaacatcaacttcagggcctcagcagcaa
taa
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