Phaseolus vulgaris (common bean): 137818211
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Entry
137818211 CDS
T03093
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03013
Nucleocytoplasmic transport
pvu03015
mRNA surveillance pathway
pvu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137818211
09122 Translation
03013 Nucleocytoplasmic transport
137818211
03015 mRNA surveillance pathway
137818211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137818211
03041 Spliceosome [BR:
pvu03041
]
137818211
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137818211
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137818211
Spliceosome [BR:
pvu03041
]
Complex C
Other components
EJC/TREX
137818211
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137818211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
137818211
NCBI-ProteinID:
XP_068477599
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All DBs
Position
10:complement(43397684..43402391)
Genome browser
AA seq
425 aa
AA seq
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MGELKDTETYEEELLDYEEEDEKAPDSAKPAESGKKGYVGIHSSGFRDFLLKPELLRAIV
DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCH
TRELAYQICHEFERFSTYLSDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALAR
DKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKK
FMQDPMEIYVDDEAKLTLHGLVQHYIKLQETEKNRKLNDLLDALDFNQVVIFVKSVSRAA
ELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVIN
YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTS
TYMPN
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggagaattgaaggacaccgagacttacgaggaagagctcctcgattacgaagaagaa
gacgagaaagctcccgattctgccaagcctgccgaatctggcaagaagggttatgttggc
atccatagttcgggttttagagacttcctgttgaagccagagcttctgcgagccattgta
gattcaggatttgagcatccttcagaagtgcaacatgaatgcatccctcaagcaatctta
ggaatggatgtcatttgtcaagcaaaatctgggatgggaaagactgctgtttttgttctt
tctacacttcagcaagttgatcctgttcctggtcaagttgcagctcttgttctttgccac
acaagagaactagcttatcagatttgccatgaatttgagagattcagcacatatctttct
gatataaaggctgctgttttctatggtggcgtcaatatcaaggttcacaaagaattgctc
aagaatgaatgtcctcatattgttgttggaactcctgggaggattcttgctctggctaga
gataaggaccttggtttaaagaacgtgaggcattttatacttgatgagtgcgacaagatg
cttgaatcacttgatatgagaagagatgtccaagagattttcaaattgacccctcatgat
aaacaagtgatgatgttttcagctacacttagtaaagagattcgacccgtttgcaagaaa
tttatgcaagatcctatggaaatctatgtggatgatgaggccaagttgacgcttcatggt
cttgtccagcactacatcaaattgcaagagacggagaagaaccggaagttaaatgatctt
cttgatgctctggacttcaaccaagtagttatttttgtcaagagtgttagcagagctgca
gagttgaacaaattgctcgtggaatgtaacttcccatccatctgcatacattctgggatg
tcacaggaagagagattgaaacgatacaaaggcttcaaggaagggaagcaaaggattctc
gtggcaactgacttagtagggagggggattgacatagaacgcgttaatatagttattaat
tatgacatgcctgattctgctgatacttacttgcacagggtgggaagagctggtagattt
ggcacgaaggggcttgcaattacttttgtctcctccactgccgactctgaagttcttaat
caggtgcaatctaggtttgaagttgatattaaggagcttcctgaacaaattgacacttcg
acatatatgcccaactga
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