Phaseolus vulgaris (common bean): 137818274
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Entry
137818274 CDS
T03093
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137818274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137818274
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137818274
mRNA degradation factors
5'-3' decay
Decapping complex
137818274
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
137818274
NCBI-ProteinID:
XP_068477690
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Position
11:48531121..48540535
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AA seq
882 aa
AA seq
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MAGFGAAATTTRDHRPLGHTSKEGEVFDASQYAFFGKNVAEEVELGGLEDQDEYKAMLAV
EFNEEDLFLNKEEAEDIRSLSDIDDLTTTFLKLNKVVTGPRSPGVIGERGSRENSSASEW
SQRDDIPYWFDQHSYDSEGQGSQDGNRWSSHPHSSVAQLHDSKPLYRTSSYPEQQRQLQH
QLQHCSSEPVPNWFDQHFYDSENTEDGNRWSSHPHSSTAQLQESKTLYRTSSYPDKRQEL
TRFSSEPILAPKSSFTSYPPPGGRSQQSSPNHSTGHLNIPFHAGGAHVALPSQNRSHYFN
SALQLSGSKHESHFSGNVRPFTTGSPLNYRMQNPWVNQSGLYSGDHPNLSSMLQQQLHHQ
SGSLSPHLLTQLQQQQQHRLLHPIQKSGRYMSGFQSHLFNPQLCSGSSMVSKYDHMLGLA
DTREHRPKSTNKGKQSHRFLQQGSDASSQKNESGSVQFRSKYMTSDEIESILRMQQAVTH
CNDPYLDDYYHQACLAKKAGAKLKHSFSPTQIKELPPRARANLDSHGFLQVDTLGRVSFL
SIRRPQALLEVESSNSSTSGSSERNISEKPLEQEPLFAARVTIEDGLCLLLDVEDIDRFL
QCNQLQDGGAQLRRRRKVLLEGLATSLQLVDPLGKNGNKVGLGAKDDVVFLRLVSIPKGR
KLISKYLQLLVSGSELMRIVCMTIFRHLRFLFGSLPSEPEAAMTTSDLSKIVCKCVQGMD
LGALGACLAAVVCSSEQPPLRPLGSTAGDGASLILVSVLERATELLTDPHGGCSYIANRS
FWQASFDEFFGLLTMYCMNKYQSIMQSLLVQGTPNVSVIGSDAAKAISREMPVELLRVSL
PHTNDHQRKLLLDFAQRSVPVVGFNNYTGSSGGHVNSETVLS
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggctgggtttggtgccgctgctaccaccacccgtgatcacagaccattgggacacact
tccaaagaaggtgaagtatttgatgcatcacagtatgcattctttggtaaaaatgttgct
gaggaagttgagttgggggggttagaagatcaggatgagtataaggccatgcttgctgtg
gagttcaacgaggaagatttatttctcaataaagaagaggcagaggatataagatcactt
tctgatattgatgatctcaccaccacttttttaaagttgaacaaggttgttactggacca
agaagcccaggagttattggtgaacggggatcaagagaaaattcctctgcttctgaatgg
tcacaaagggatgacattccctactggtttgatcagcatagctatgacagtgaagggcaa
ggatctcaggatggcaatagatggtcatcacacccccattcttctgtagctcagctacat
gactcaaagcccttgtacagaacatcttcatatcctgagcagcagcgacagctgcaacac
caactccaacattgctctagtgaacctgttcctaactggtttgatcagcatttttatgat
agtgaaaatactgaggatggaaaccgatggtcatcacatccacattcctccactgcccaa
ttacaagaatcaaagaccttgtatagaacatcttcttatcctgacaagagacaggaactt
actcggttttctagtgaacctattttggcaccaaaatcttcatttacttcgtatcctcca
cctggtggtaggtcccaacagtcttccccaaatcacagtacaggtcacttgaacattcct
tttcatgctggtggagctcatgtggctttgccgtcacaaaatcgttctcattatttcaat
tctgcactacagttgagtggatcaaaacatgagtcacattttagtggaaatgtgcggcca
tttacaactggctccccactaaattatcgaatgcagaatccctgggtcaaccaatctggg
ttgtattctggagatcatccaaacctcagtagtatgttgcagcaacaattacaccatcag
agtggatcattatcacctcatctattgacccaattgcagcagcaacagcagcatagactg
cttcatcccattcagaaatcaggacgctacatgtcaggtttccaatcccatttatttaac
cctcagctttgttctggatcatccatggttagcaaatatgatcatatgcttggtcttgct
gataccagagaacacaggccaaagtcaacaaataagggtaaacagagtcatcgttttttg
caacaaggttctgatgccagtagccagaagaatgaaagtggttcagtacagtttaggtcc
aagtatatgactagtgatgaaattgagagtattcttagaatgcagcaagctgtgactcat
tgcaatgatccctatcttgatgactattatcaccaagcttgtcttgctaaaaaagctggg
gctaagttgaaacattcatttagcccaacacaaataaaggaacttcctccacgagcccgt
gccaatctggactcccatggttttcttcaggttgatactttagggagggtttcattcctg
tctattcgtcgacctcaggctcttcttgaagttgaatcatcaaactcttcaactagtggt
agttctgaacgtaatatttcagagaagccccttgaacaggagcctctgtttgcagccaga
gtcacaattgaggatggtctttgtcttcttcttgatgtagaggatattgatcgttttcta
cagtgtaatcaactacaagatggtggggctcaattaagacgaagacggaaggtccttttg
gaaggactagcaacatctctccaacttgttgatccactgggaaagaatggaaacaaagtt
gggcttggtgctaaggatgatgttgttttcttacgattagtatctatacccaaaggtcgt
aaactcatttcaaagtatcttcagctacttgtttctggtagtgagcttatgcggatagtc
tgcatgaccatctttcgtcatttgagatttttatttggtagtctaccatctgaacctgaa
gctgccatgactacaagtgacctttctaagattgtttgtaagtgtgttcagggaatggat
cttggtgccctaggtgcttgtcttgcagctgtggtttgttcctcagagcaacctcctcta
cgtccccttggaagcacagctggagatggtgcctccctcattttagtatctgttcttgag
agggccactgaacttcttacagatccccatggtggttgcagctatatagccaatcgttca
ttttggcaggcctcatttgacgaattttttggccttctcacaatgtattgcatgaataag
taccagagtatcatgcaatcactgcttgtacaagggacgccaaatgtgtctgtaattgga
tcagatgctgctaaagcaattagtagggaaatgcctgttgaactcttaagggtaagtctt
cctcacaccaatgaccaccagaggaaattgttactagattttgctcagcgctcggtgcct
gtggttggatttaacaattataccgggagcagtggtggtcatgttaactcagagactgtg
ctaagttga
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