Phaseolus vulgaris (common bean): 137819608
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Entry
137819608 CDS
T03093
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137819608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137819608
03012 Translation factors [BR:
pvu03012
]
137819608
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137819608
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137819608
Translation factors [BR:
pvu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137819608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
AAA_16
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
137819608
NCBI-ProteinID:
XP_068479610
LinkDB
All DBs
Position
11:49869508..49891555
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AA seq
1159 aa
AA seq
DB search
MRNSKFAVSLLIARAKSLQLHHHTCHCVASSSSSPTSTSLFRFLPSSIRNAKSVAATRLF
SSYYSVEQFSDDEYECDFENQQVSSTVANVDEWKWKLSMLLRSEKDQEIVSRDRKDRRDY
EQIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQE
YLDRLQLNSAKATGSLDDVNSANEVKEIDMDENTDSFVDESVMEKVLQKRSLRMRNMQRA
WQESPEGRKMLEFRKSLPSFMEKQGLLQAIAHNQVIVISGETGCGKTTQIPQYVLESQIE
SGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSG
ILLRRLLSDRNLNGVTHIFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAEL
FSNYYGGAPTFRIPGFTYPVRSHFLEDVLEMTGYKLTSFNQIDDYGQEKLWKTQKQLAPR
KRKNQINSLVEDALSKSNFENYSSRARDSMASWAPDCIGFNLIEAVLCHICRKERPGAVL
VFMTGWEDISSLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPPNIRKVILAT
NMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGEC
YHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRTVQNAI
DFLKLIGALDEKENLTNLGSFLSILPVDPKLGKMLIMGAIFRCFDPVLTVVAGLSVRDPF
LLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSSYEYCWRNFLSAQTLQA
IHSLRKQFSFILKDAGLVDADTSMINKLSHNQSLVRAIICSGLFPGIASVVHRETSMSFK
TMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNG
IQAGHLKMLDGYVDFFMDPNLADCYLKLKEELDKLIQKKLEDPSIDIHKEGKYLVLAVQE
LVSGDQCEGRFVFGRESQKPRASNRVSNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKT
KHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDKSPPDV
TDNMLKILGKRRKSKRRHD
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaattcaaagtttgcagtgtcactgctcatagcacgtgccaagtccctccaactt
caccatcacacgtgtcactgcgtcgcttcttcttcttcttctcctacctcaacctcactc
ttcaggtttctcccttcttccatacgaaacgcgaagtccgtcgccgccacgcgcctcttc
tccagctactattccgtcgaacagttctccgatgatgaatacgaatgtgactttgagaac
cagcaggtatcgtctacggtggccaatgtggacgagtggaaatggaaactcagcatgctg
ttacgcagcgaaaaggaccaggagattgtatcaagagatagaaaagataggagggactat
gaacagatagctaaccttgccaaaagaatggggctatacagtgagttgtttggaaaggtg
gttgttgcaagcaaggtgcctcttcccaactaccgtccagatttggatgacaaacgtcca
caaagagaggtggttattccactaagcttgcaaaggagggttgagggtttgctgcaggaa
taccttgatagacttcagttgaattctgcaaaggcaactggcagcctggatgatgtgaac
tctgccaatgaagtcaaagaaatagacatggatgaaaatactgattcttttgtggatgaa
tctgttatggaaaaggttctccagaagaggagtttgaggatgcgcaatatgcaaagagct
tggcaggaatcacctgaaggcaggaagatgctggaattccggaaatctctaccatcgttt
atggaaaagcaaggtttacttcaagctatagcacacaatcaggtgatagttatatctgga
gagactggctgtggtaaaaccactcaaattcctcaatatgtattggaatcacagatagag
tctggccgtggagcattttgtaacattatttgcacgcagcctcgaaggatatctgccatg
gcagtatctgagagagtgtcagccgagcggggagaacctcttggtgaaacagttggcttc
aaagttcgattggaaggaatgaaagggaaaaatacccatctgctattttgtaccagtggt
atattacttagaaggttgctgagtgatcgaaatctgaatggtgtaacccatatttttgtg
gatgaaattcatgaaagaggcatgaatgaagacttcttattgattgtgctaaaggatctg
cttccacggcgtcgggatttaaggttggttttaatgagtgccaccttgaatgctgagctt
ttttcaaattattatggaggtgctcccacatttcgaattccgggtttcacctatcctgtt
agatctcactttttagaagatgtgttggaaatgactggatacaagttgacttccttcaac
caaattgatgattatggtcaagagaaactgtggaaaacacaaaaacaattagcaccacgg
aagaggaaaaatcagatcaattctcttgttgaggatgctctttcaaaatcaaactttgag
aactacagctccagggcacgtgattcaatggcatcttgggcacctgactgcatagggttt
aatctcattgaggctgttctatgccatatatgtcggaaggaacgaccaggtgctgtctta
gtgtttatgacgggatgggaggatataagttccttaagagatcaacttaaagcacatcct
cttttaggagatcccaataggattctacttctaacgtgtcatggttcaatggcaacttca
gagcagaaactcatatttgagaaaccacctccaaatataaggaaagtaatacttgctaca
aatatggctgaggcaagtattacaatcaatgacatagtttttgtggtcgattgtggaaaa
gcaaaagagacaacatatgatgctttaaataacacaccttgtcttctaccttcttggata
tcacaagcatctgcacgtcagagaaggggtagggctggtcgtgtgcagccaggagaatgc
taccacctttaccccaaatgtgtttatgaagccttttctgaatatcaacttcctgaacta
ctgagaacacctttgaactctctttgcttgcaaataaaaagtttgcaggttgagagcata
ggagagttcttatcagcagctttacaggcaccagagccacgaaccgttcaaaatgctatt
gatttcctcaagttgattggtgcactagatgaaaaagaaaatcttacaaatcttgggagt
tttctctctatacttcctgtagatcccaagctgggcaaaatgttaataatgggagctata
tttcgatgctttgatcctgttcttacagttgtagctggccttagtgtcagggatccgttt
cttttgccccaagacaagaaggatttagcagggacagcaaagtctaggttttctgccaaa
gattacagtgatcatatggctcttgttcgagcatatgaaggatggaaagatgcagaaaga
gaaggatcatcttatgaatactgctggagaaattttctctctgcccaaactcttcaggct
attcattcacttcggaagcagtttagcttcatcttgaaagatgctggcttggtagatgct
gatacaagcatgattaacaaattgagtcacaatcagtctcttgtgcgtgcaatcatttgt
tctggactctttcctggcatagcatcagtggtgcacagggagacatccatgtcatttaaa
acaatggatgatggccaggttttattatatgctaattcagtgaatgcacgttaccagacc
attccatacccatggttggtttttggcgagaaagttaaggtcaatgcagttttcatccgt
gattccactggtgtatctgattcaatacttatcctgtttggtggtgctctaagtaatggg
atacaggctgggcatctgaaaatgttagatggatatgttgacttcttcatggatcctaat
ttagccgactgctatttgaagcttaaggaagagctcgataagcttatccagaagaagctt
gaagatcctagcattgacattcacaaggaagggaagtacttggtgcttgctgttcaggag
ctggtttccggggatcaatgcgaaggaagatttgtgtttggtcgtgaaagccagaagcct
agggcctctaatagggtctctaatgatgaaaataaattcacaaaagatgggacaaatccc
aagagcttgctgcaaacactgttgatgcgagcaggacactcccctccaaaatacaaaacc
aaacatctcaagacgaatgagtttagggcactggtggagtttaagggaatgcaatttgtt
ggcaaaccaaagagaaacaagcaacttgcagaaagggatgctgctatagaggcattggct
tggttgactcacacttctgacaacaatcagcatgaagatgataaatctcctcccgatgtc
actgataacatgctaaaaatcctagggaagcgtagaaaatcaaagcgacgccatgattaa
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integrated database retrieval system
