Phaseolus vulgaris (common bean): 137821022
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Entry
137821022 CDS
T03093
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137821022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137821022
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
137821022
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
OB_RNB
DUF5767
Motif
Other DBs
NCBI-GeneID:
137821022
NCBI-ProteinID:
XP_068481532
LinkDB
All DBs
Position
9:complement(21391838..21409144)
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AA seq
935 aa
AA seq
DB search
MLHNKSFVKKTRAGKVMKQVREHYLRDDIYCGAPFCTVCDTSGARLNASPSTTILVVDTN
VVLNQIDLLENQAFDNIVVLSIVLEEVKNKNMAVYNRIRALCSNSTKKFYVFSNEYHRDT
YVKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDRENKRKASEEGIFAETVES
YVKSLDQPDLLDLLVRPASEDVNMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQG
KLRVNRYNPFEAYVGRESIGDEIVIYGRSNMNRAFDGDVVAVELLPQDQWQEVSSLSIAG
EEDENEDEDVHLAPNSADVAPRTIPQQGSSGQVNAVPNRPSGRIVGIIKRNWHSYCGSLE
PMPMPAGSGGIAHALFVSKDRRIPKLRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYV
RTIGEIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWLVSSEDLSNPIRQDLRHLLV
FSVDPPGCKDIDDALHCHALPNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVER
RIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIISTRYTKSVIKSSAALSYVEAQA
RMDDSRLRDPITTDLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ
IREANQMVEEFMLAANVSVAEQILKSFSLCSLLRRHPTPTREMLEPLLQTAAAVGLHLDV
SSSKALADSLDHAVGDDPYFNKLIRILATRCMSQAVYFCSGDLSPPEYHHYGLAAPLYTH
FTSPIRRYADVIVHRLLAASLGISKLPSVFQDRLQLSSIADNLNYRHRNGQYAGRASVEL
HTLIYFRKRPTDTEARIVKIRSNGFFVFVPKYGIEGPIYLTKSGKGNGEWYVDEQQQKIK
RMDGSLSYSVLQTVQIHMEVVEPQPNRPKLQLTLI
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgctccacaacaagtccttcgtcaagaaaaccagggccggcaaagtcatgaagcaagtg
cgggagcactacctgcgtgacgacatatactgcggcgcaccgttttgcaccgtttgcgat
acttcgggtgctcgcctcaacgcttccccttcaacaaccattcttgtcgtggacaccaat
gtcgtgctcaatcagattgatttgctggagaatcaggcattcgataacattgtggtgttg
tccattgtgttggaagaggttaagaacaagaatatggctgtttacaatcgtataagagct
ctctgtagcaattccactaagaagttctatgttttttccaatgagtaccacagggataca
tatgttaaggaaatgagtggtgaaactaaaaatgataggaatgatagagctatccgagtg
gctactcagtggtatcagaatcatcttggtggtgcagtaaaggttttgcttataactaat
gatagagagaacaaaaggaaggctagtgaagaaggcatttttgctgaaacagttgagtca
tatgtcaagtctttagaccaacctgatctacttgatcttcttgtgcggcctgcatcagaa
gatgtgaacatggaagaggttgaagatcttagaccatccaagaggaaagtcatatattca
gagcataagccaatgtcagaaattacttctggtttgcatcgtggaatatatcatcaaggg
aagcttcgcgtaaaccgttacaatccatttgaagcatatgttgggagggagagcattggt
gatgaaatagttatttatgggcgctcaaatatgaatcgagcttttgatggggatgttgtg
gcagttgaacttctgccacaggaccagtggcaagaagtctcatctctatctatagctggt
gaagaagatgagaatgaggatgaagatgtccatctagctccaaatagcgctgatgttgca
cctaggactattcctcagcagggttcttctggacaagtaaatgctgtacctaatcgtcct
tcgggtcgtattgttggtattataaagaggaactggcattcgtattgtggatctttggag
ccaatgcctatgcctgcaggaagtggtggaattgcccatgccttgtttgtctccaaagat
cgcagaattcccaagcttcgaatccaaacacgccaacttgagaaccttttggataagagg
attattgttgcagttgattcttgggatcgtcagtctagatatccatcaggccattatgtg
cgaactataggggagataggtgatagagatactgaaagtgaggtggttttgatagaaaat
gatataaatacacgaccattctcttcacaagtgctggcatgcttgccaccattgccatgg
ttggtctcttctgaagatttgtccaatccaatcaggcaggacttgcgtcatctgcttgtg
ttcagtgtggatcctccaggctgcaaggatattgatgatgcactccattgtcacgctctt
ccaaatggaaactttgaagttggagttcatattgctgatgttacaaattttgttcatcct
ggcactccacttgatgatgaggcttcacagaggggtacatctgtctaccttgtggagcgg
cgaatagacatgcttcccaaacctcttacggaggatatatgttctcttcgttctgatgtg
gaaaggctagcattctctgtcatttgggaaatgacacctgaagcggacattatttccacc
agatatacaaaaagtgtcataaagtcctctgcagcattgtcttatgttgaagcacaagcg
aggatggatgatagtcgactgagggatcccattactacagatttgaggaatatgaatagt
ttggctaagaaaatgagattgaggcgcattgagagaggagctttgactctagcatcggct
gaagtcaaatttcaaattgacacagagactcatgaccctcttgatattggaatgtaccag
atccgggaggccaaccaaatggtggaggagtttatgcttgctgctaatgtttccgttgca
gaacaaattcttaaaagtttttcgttgtgctcattattaaggcgtcatccaactccaacc
agagagatgcttgaacccttattacagactgctgctgcagttggcttgcacttggatgtt
tcatcatcaaaagcattggctgattctcttgaccatgctgtgggtgatgatccgtacttc
aataagttaatccgtatactggcaactaggtgcatgagtcaggcagtttatttctgcagt
ggggatcttagccctccagaatatcatcattatgggcttgcagctcctttgtatacccat
ttcacatcacctataagaagatacgcagatgtcattgtgcacaggctacttgctgcttct
ttaggaatatcaaagttaccgtctgtatttcaagacagactccagctcagtagtattgca
gacaatttaaattatcggcataggaatggccagtatgcagggcgagcatctgtagagcta
catactctaatttatttcaggaagaggcctacagacacggaggctagaatagtgaaaata
agatctaatggcttttttgtgtttgttcccaaatatggcatagaaggacctatatatttg
acaaaatccggaaagggaaatggagaatggtacgtagatgagcaacagcagaaaataaaa
aggatggatggtagcctttcatacagtgttttgcagacagtccaaattcacatggaggtt
gtggagcctcagcctaaccgtcccaaacttcagcttactctcatctag
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