Phaseolus vulgaris (common bean): 137821614
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Entry
137821614 CDS
T03093
Name
(RefSeq) uncharacterized protein isoform X1
KO
K06100
symplekin
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137821614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvu03021
]
137821614
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137821614
Transcription machinery [BR:
pvu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137821614
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
137821614
U7-dependent histone pre-mRNA processing factors
137821614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
137821614
NCBI-ProteinID:
XP_068482396
LinkDB
All DBs
Position
9:21864594..21886498
Genome browser
AA seq
1342 aa
AA seq
DB search
MAAPTRDQALSLLAAANNHGDLTVKTSSLKQAKDLLLSIDHSLAADLFPYLLELQSSPES
LVRKLLIQIIEEIGFKAVEHSPTLISVLLTFLRDSDITVVKQSIVSGTNIFGSVFEELIL
QFQQNGKVERWLEDTWMSMLKFKDAVFGIALEPGSVGIKLLALKFLEMFVLLFTSDVSDS
EKLATKGVRQAVNVLWLVGGHPHPVLDPVVLMSEANRTLGILLNLLQSVGSPPGCLTITV
VNCLAAIARKRPQHYDTILLALLEFDPNALTAKGCHVASIQYSLRTALLGFLRCTYSPIL
ESRERLIRSLRAMNAGDAADQVIRQVDKMVKNGDRSTRDARISKDDQPSTQSSVSGELSR
KRPVPLDNEQMTNGHETISKRIRSGPDSHSTLPAKINDSGQDPNSVNGVSPNVPLLDSEM
TAVEQMIAVIGALLAEGERGAESLEILISKIHPDLLADIVITNMKHLPKTPPPLARIGNL
PVTRQLSSQVSQSQVIATSVPTNSVQSLSGTGQALLPSTTAAVIGASSLLSDTSNFSNLP
ADSKRDPRRDPRRLDPRRVVVAPGGATVSITDDTGATKLEFDEPVSSIKPVSLPVVTADD
NTPSDLTVKLKNDDMISEGTSVSGPDQVIPKTEIQERPGDIHRIAEADTSFGPSVSSREE
DPSMVNLSDDIETIGTDSSSISEFDQFSLDVQVESTLEDTCLELPQLPPYVELSKEQQSM
VKNMAVRHIINSYKHLHGTYCQQFWMPLLARLVAQIDDDDEFIMMLQKHILEDHWLKGHE
LVLHVLYHLHSLMILDSVENASSSAVLYEKFLLGVAKTLLDSFPASDKSFSRLLGEVPLL
PESSLKILNDLCYSDVIGHDGKVIRDIERVTQGLGAIWSLILGRPQNRQACLGIALKCAL
HPQDEIRAKAIRLVTNKLFQLSYISGDVEKFATNMLLSAVEHEVSDTGLLQSGPGATEHR
AEAEVEGQEISTSQVSESTISEDDSTRVAKPLIQNVPSISFSEAQRLISLFFALCTKKPS
LLQIVFNVYGQAPKTVKQAFHRHIPIVVRALGQSYSELLRIISDPPQGSENLLTLVLQIL
TQDSTPSSDLISTVKRLYETKFRDVTILVPLLSSLSKQEVLPIFPRLVDLPLEKFQRALA
HILQGSAHTGPALTPVEVLVAMHGIVPEKDGLALKKITDACSACFEQRTVFTQQVLAKAL
NQMVDQTPLPLLFMRTVIQAIDAFPALVDFVMEILSKLVTRQVWRMPKLWVGFLKCVYQT
QPRSFHVLLQLPPQQLESALNRHSNLRGPLASYASQPTIKSTLSRSILAVLGLANETHVQ
QHLSTTLHSSDTSSSVHGATLT
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcctaccagggaccaagccctctctcttctcgctgctgccaacaaccacggc
gacctcaccgttaaaacctcatcgctcaaacaagcaaaggaccttcttctctccatcgac
cactctctcgccgcggacctcttcccttacttgcttgagcttcagtcttctcccgagagc
ctcgttcgcaaattgctcattcagataatcgaggagattggttttaaagcagttgaacac
tctcctacgctgatatctgtactattaacatttctacgtgacagtgatataactgttgta
aagcagtctattgttagtggcacaaatatctttggtagtgtttttgaggagttgattttg
cagtttcaacaaaatggtaaagttgagaggtggctagaagatacttggatgtcaatgctt
aagttcaaggatgctgtttttgggattgctctggagcctggttctgtcggaataaagttg
ctggcactgaaattccttgaaatgtttgtgttactatttacatctgacgtcagtgattct
gagaaattagccacaaaaggagttagacaagctgttaatgtcttgtggttggttggtggt
catcctcaccctgttcttgatccagtggtgctcatgtcagaagcaaataggactcttggc
attctattaaatttattgcagtccgttggcagtcctcctggttgcttgactattactgtt
gtaaattgtttagcagccattgcaagaaaaaggccacaacactatgatactattctttta
gcactgcttgaatttgatccaaatgctctaacagctaagggatgtcatgttgctagtatt
cagtactccttaagaacagctttgttgggatttcttaggtgcacttattcaccaatacta
gagtcaagagaaagactaataaggagcctacgagctatgaatgcaggggatgctgcagat
caagtgattcggcaagtcgacaaaatggttaaaaatggtgatcgttctactcgtgatgca
cgaattagcaaggatgatcaaccatcaactcagtcatctgtttcaggggaattatctaga
aaaagacctgttcctctagataatgaacaaatgaccaatggtcacgaaaccatctctaaa
cggattcgttctggtcctgactctcactctactttaccagctaaaataaatgattctggg
caagatcctaactctgttaatggagtatcacctaatgttcctttgctggatagcgaaatg
actgctgtagagcaaatgattgctgtgattggtgctttacttgctgaaggagagagaggt
gccgaatctcttgaaatcctgatttcaaagattcatcctgatctattggctgatattgtc
ataactaatatgaagcacttgcctaagactcccccaccactagcgaggattgggaattta
ccagtaacacgtcaattaagctcccaagtcagtcaatcacaggttatagcaacttccgtt
ccaacaaattctgtccaatcattgtctggtactggccaagctttgttgccttcaactaca
gctgctgttattggcgctagttcattgctgtctgacacgtctaacttcagtaacctgcct
gctgattctaaacgtgatccacggagggatccccgtcgcctcgatccccggcgtgttgtg
gtagctcctggaggagcaactgtatcaattacagatgatactggggccacaaaattagag
tttgatgaacctgtttcctccattaagcctgtttcacttcctgtcgttactgctgatgac
aacactccatcagatttaacagtcaaactaaaaaatgatgatatgatctctgaaggtacc
tcagtttcaggacctgatcaggtaatccctaaaacagagattcaggaaaggcctggagat
attcatcggattgctgaagcagatacttcctttggtccctcagtctcatcaagagaggag
gatccgagtatggtgaatctgtcagatgacattgaaacaattggtacagattcatcatct
atttcagagtttgatcagttttctcttgatgttcaagttgaatccacattagaagatacc
tgtctggagttaccacagcttccaccttatgttgaactatccaaagaacagcaaagtatg
gtgaaaaacatggctgttaggcatataatcaattcttacaaacatttacatgggacatat
tgtcagcagttttggatgccactacttgctcgactagttgctcagattgatgatgacgat
gagtttattatgatgcttcaaaaacacatcctggaagaccactggctaaagggacatgaa
ctcgtactgcatgttttgtaccatctgcactcccttatgatattggattcagttgaaaat
gcttcatcttctgctgttttatatgaaaaatttctcttgggagtggccaaaactttgtta
gactcttttccagcttcagacaagtcttttagtagacttcttggtgaagttccacttttg
cctgaatcgtccttgaagattttaaatgatctctgctattctgatgttattggtcatgat
ggaaaagttatccgtgacattgaacgtgtgactcaaggccttggtgctatctggagttta
attttggggcgtccacaaaatcgccaagcctgcttgggaatagcattgaagtgtgctctc
cacccacaggatgagattcgagctaaagctattcggctggttacaaacaagctctttcag
cttagttacatatcaggagatgttgaaaaatttgcaacaaacatgctgctttctgctgta
gaacatgaagtttcagatacaggtcttttgcaatctggacctggagctactgaacataga
gccgaggcagaggttgaaggccaggaaataagtacttcccaggtttcagagtctacaatt
tctgaagatgactctactagggtggctaaaccattgattcaaaatgttccatctatatca
ttttctgaagctcaacgcctcatttctctgttttttgctttgtgtacaaagaaacccagt
cttcttcagattgtatttaatgtgtatgggcaagccccgaaaactgttaaacaggctttt
caccgccacattcctattgttgtgagggcactggggcaatcttattctgaattgctccgc
atcatatctgatccaccccaaggaagtgaaaatcttctgacactggtactgcaaatattg
actcaggactctacaccatcttctgatttaatatctactgttaaacgtttatatgaaaca
aaatttagggatgttacaattcttgttccattattgtcttcgctttccaaacaggaggtt
ttaccaatattcccaaggcttgttgatcttccattggaaaagtttcaaagagcacttgct
cacatactacagggttcagctcatacaggtccagctttaactcctgtagaagtgttggtt
gcaatgcatggaattgttccagagaaggatggccttgcacttaagaagataacagatgct
tgctcggcttgttttgagcaacgtactgtgttcacacaacaggttctggcgaaggcattg
aaccagatggttgatcaaactccgttgcctctacttttcatgagaacagttattcaggca
attgatgcttttcctgcactggttgattttgttatggagatactctcaaaactcgtgaca
agacaggtgtggcgtatgcctaaactttgggttggtttcttaaaatgtgtatatcagaca
cagccacgttcttttcacgtgctattgcagttgccacctcaacaacttgaaagtgcactc
aacaggcattctaatctcagaggtccccttgcttcatatgccagtcaaccaactataaaa
tcaacacttagtagatcaattttagcagttcttggtcttgcaaatgaaactcatgtgcag
caacatttgtcaactacgttacactcttctgacacaagttcttcagttcatggagcaact
cttacgtga
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