Phaseolus vulgaris (common bean): 137822718
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Entry
137822718 CDS
T03093
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03013
Nucleocytoplasmic transport
pvu03015
mRNA surveillance pathway
pvu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137822718
09122 Translation
03013 Nucleocytoplasmic transport
137822718
03015 mRNA surveillance pathway
137822718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137822718
03041 Spliceosome [BR:
pvu03041
]
137822718
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137822718
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137822718
Spliceosome [BR:
pvu03041
]
Complex C
Other components
EJC/TREX
137822718
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
137822718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
137822718
NCBI-ProteinID:
XP_068483767
LinkDB
All DBs
Position
9:14903219..14909988
Genome browser
AA seq
427 aa
AA seq
DB search
MGETKDETYEEELIDYEEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
TRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccaaggacgaaacatacgaggaagagcttattgactacgaggaggaagaa
gacaaggctcccgactccgtcggagctaaagtcaacggcgaagctaccaagaagggctat
gttggaattcacagttcaggattcagagactttcttctgaagccagagcttcttcgggct
attgtggactcgggatttgagcatccttctgaagtgcaacatgagtgcatccctcaagca
attctaggaatggatgtaatttgccaagcgaaatctggaatgggaaagactgctgtcttt
gttctctcgactctgcagcagattgatcccgttcctggccaagtttctgctcttgttctg
tgtcatacaagagaattagcataccagatatgccatgagtttgagaggttcagtacctat
ttacccgatctcaaggttgctgtcttttatggtggggtcaacatcaaagttcacaaggat
ctgctgaaaaatgagtgccctcatattgttgtcggaacacctggaagaatactagcattg
acaagggataaggatctttctttgaagaatgtgagacatttcatattagatgaatgcgac
aagatgctggaatcactggatatgaggaaagatgttcaagacattttcaagatgactccc
catgataagcaagttatgatgttttccgcaacactcagcaaggaaattcgcccagtctgc
aagaaatttatgcaagatcctatggaaatttatgttgatgatgaggccaagttgacactt
cacggacttgtgcagcactacatcaaattgaaagaggaggagaaaaaccggaagttgaat
gatcttcttgatgcactggactttaatcaagttgttatctttgttaaaagtgttagtaga
gcagccgagctggacaaactacttgtggagtgcaactttccttctatatgcatccactct
ggcatgtcccaggaagaaaggttaaagcgttataaaggtttcaaagagggccatacaagg
attcttgttgcaacagatttggttggaagagggattgacattgaacgtgtcaacattgtt
ataaactatgacatgcctgattctgcagacacatacttgcacagggttggtcgagctgga
agatttggcaccaaaggccttgcaattacatttgtttcttgttctactgatgttgatgtt
ctcaacaatgttcagtcaaggtttgaggtggatataaaacagctgcctgagcagattgat
acctcaacttatatgccatcgtag
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