Phaseolus vulgaris (common bean): 137824103
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Entry
137824103 CDS
T03093
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137824103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137824103
03041 Spliceosome [BR:
pvu03041
]
137824103
03009 Ribosome biogenesis [BR:
pvu03009
]
137824103
03016 Transfer RNA biogenesis [BR:
pvu03016
]
137824103
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137824103
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
137824103
Spliceosome [BR:
pvu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
137824103
Complex C
U4/U6.U5 tri-SnRNP related factors
137824103
Ribosome biogenesis [BR:
pvu03009
]
Eukaryotic type
Pre-60S particles
Helicases
137824103
Transfer RNA biogenesis [BR:
pvu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
137824103
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
137824103
NCBI-ProteinID:
XP_068485660
LinkDB
All DBs
Position
8:complement(237943..247912)
Genome browser
AA seq
989 aa
AA seq
DB search
MEIEGMVVQQPTMGSLKRKSPEESSTSASQPLHDCVHHVSYPHGYTHPSSPPTQTHAEPA
KKFPFTLDPFQSQAITCLENGESVMVSAHTSAGKTVVALYAIAMSLRDGQRVIYTSPIKA
LSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVAWIVFDE
VHYMRDRERGVVWEESIVLSPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHVVYTDYRP
TPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNALVPATEGDKRKENGKRQKGLVLGR
VGEESDIFKMVKMIIQRQYDPVILFSFSKRECELLAMQMAKMDLNGDNEKENIEQIFSSA
MDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSI
GLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEKMEPST
TKNMVKGAADCLNSAFHLSYNMILNQMRCEDGDPEKLLRNSFFQFQADRAIPDLEKQIKV
LEKERESIFIEEENSLKDYFNLLEQHRNLNKEVRDIVLSPRHCLPFLQPGRLVSLECTSS
NEDLTPIFIEDQLTWGLVVNFERVKSVSDDDASVKPEDASYNLDILTRCVVKKDNIGKKS
IKIVPLKEVGEPLVVSVPISQVNTISSLRLFIPKDLLPLEARENTLKKVLETLSRFGEKG
LPLLDPEEDMKIQSSSYKKASRRIEALESLFEKHEIAKSPLIKQKLKVLQRKQELTAKIK
SIKKTLRSSSALAFKDELKARKRVLRRLGYATSDNVVELKGKVACEISSADELTLTELMF
NGVFKDIKVEEMVSLLSCLVWQEKIHDAAKPREELDLLFMQLQDIARRVAQLQLECKVEI
DVDSFVKSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIAAAKS
IGETQLEAKFEEAVSMIKRDIVFAASLYL
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggagattgaaggcatggtagttcagcaaccaacgatggggtcactgaagagaaagtcg
ccagaagagtcttcaacttcagcttcgcagccactgcacgattgtgtgcaccatgtctca
tatccacacggttacacccacccttcttctccgcccactcaaacgcacgcagaacccgcc
aagaagttcccgttcactctcgatccctttcagtcccaagccatcacttgcctcgaaaac
ggcgagtccgtcatggtgtctgcacatacctctgctggcaaaactgtggtggcgttgtat
gctattgctatgtccctccgagatgggcagcgcgtcatctacacttcccctatcaaggct
ctcagcaaccagaagtacagagaatttaaggaagaattttctgacgttggcttgatgacc
ggagacgtcaccattgatcccaatgcttcttgtctggtcatgactacggaaatctggcgt
agcatgcagtacaaagggtctgagatcactagggaggtggcttggattgtttttgatgag
gtgcattacatgcgtgatcgtgagagaggcgtggtttgggaagagagtattgttttgtcg
cccaagaattcgcgttttgtgttcctgtctgccactgtccccaatgccaaggaatttgct
gattgggtggcaaaggtgcaccaacaaccttgtcatgttgtgtatactgattaccgacca
acaccccttcaacattacatttttccttctggaggtgatggtctatatctggttgtggat
gaaaagggaaaatttcgcgaagacagctttcagaaatctttgaatgctcttgtccctgcc
actgagggtgataagagaaaagagaacgggaagcggcaaaagggtttggtgctgggtaga
gttggtgaagaaagtgacatattcaagatggtgaaaatgatcattcagcgtcaatatgat
cctgtgatactgttcagctttagcaaaagggagtgtgagcttcttgcaatgcagatggca
aaaatggatcttaatggggataatgaaaaggagaatatagaacaaatattttctagtgct
atggacatgctttcagatgatgataagaaactaccccaggtttcgaacatgttgcctttg
ctgaaacgtggaataggagtacatcactctggtttactcccaattctaaaggaagtgatt
gagatcttatttcaagaagggctaataaagtgtttgtttgccacagaaacattcagcatt
ggtttgaacatgcctgcaaaaactgttgttttcacaaatgtccgcaaatttgatggggac
aagtttaggtggatatccagtggagaatatattcaaatgagtggtcgtgctggtcgacga
ggcattgatgaacgtggtatatgtatcctcatggttgatgagaagatggagccttctact
actaaaaacatggttaaaggggctgccgattgtttaaacagtgcctttcatttaagctac
aacatgattttaaaccaaatgcggtgtgaagatggtgatcctgaaaaattgctccgtaat
tctttttttcagttccaagctgatcgtgccattcctgatcttgagaaacaaataaaggtg
cttgaaaaagagagggaatcaatttttattgaagaagaaaacagtttaaaggattatttc
aatctgctggagcagcacaggaatttgaataaggaggtccgtgacattgtgctatctcca
aggcactgtttaccttttctacagcctgggaggcttgtttcacttgaatgcacttcaagt
aatgaagatctaacccccatttttatcgaggaccagttgacttgggggttggtcgttaat
tttgaaagggtaaagagtgtttctgatgatgatgcaagtgtaaaacctgaggacgcatct
tacaatcttgatattcttacaagatgtgttgtgaagaaagataacattgggaaaaaatct
attaagatcgttcctcttaaagaagttggagaacctctagtggtttcagttcctatctct
caggtcaatacgataagtagtctgcgtttatttataccgaaggatcttttgccattggaa
gcacgagaaaacacactgaagaaagtgttggaaactctttctagatttggtgagaaagga
ttgccccttctagatcccgaagaagacatgaagattcaaagcagctcatataaaaaagca
tctcgtaggatagaagctttggagagcctatttgaaaagcatgaaattgcgaagtcacca
cttataaaacagaaactgaaagtcttacagaggaagcaagaactgactgcaaagataaag
tccattaagaaaacattaagatcttcttctgctttagctttcaaggatgaacttaaagcg
agaaagagagttcttcggaggcttggatatgctactagtgacaatgtggtggagttaaaa
gggaaggttgcttgtgaaattagtagtgcagatgaattgaccctaacagaattaatgttc
aatggtgtctttaaggacataaaggtggaagagatggtttctctcctttcttgtcttgtc
tggcaagaaaaaatccatgatgctgccaaacctcgggaagaacttgatctgctttttatg
caattacaagacattgctcggagagttgcccaacttcagcttgagtgcaaggtggagatt
gatgttgatagttttgtcaagtcgtttagacctgacattatggaggctgtgtatgcttgg
gcgaaaggttctaagttctatgagatcatggaaatcacacaagtctttgaaggtagcttg
attagagcaattagaagacttgaggaagttcttcagcaattaatagcagcagctaagtca
attggggaaactcaacttgaggcaaagtttgaagaagctgtgtccatgatcaagagggac
attgtctttgcagcatccctgtatttgtag
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