Phaseolus vulgaris (common bean): 137825820
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Entry
137825820 CDS
T03093
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137825820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137825820
Enzymes [BR:
pvu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
137825820
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137825820
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
137825820
NCBI-ProteinID:
XP_068487707
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Position
8:22747168..22752922
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AA seq
617 aa
AA seq
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MASVFQLRRRFLCTSSKWKVKQVTTSNFEESLQEIKTHISSSDYVAVSMARTGSPSPPSW
LRPLPFDTAQTAYSKARRAAHRFQVLHFAVCPFSVSHSDKLLAHPYNFVLFPRDELKMGM
PAYSFSSQTSLLASMARRGFDFNACVYNGISYLSRAQESAAKVRLGAALPSLREVKSSSS
PTVADTVFVERTRSRIKHWRKTFERSGTSTSRDEELINSLKNIVLGSEQFRSRPCMTIDV
CSERQVQLILEMLVDHSDDLLPLLIPTKSGTTHALRIVLANSKEDKELLERELQNFEEEE
SKKIRGFREVIDSISASQKPVICYNCLNDCTLIHSKFIAPLPLEVDEFVSSLHSIFPNVL
DINYLMKKHGTMRKVTNIPSAISYLNNNFFAPVDLEIPDQATVKEGKIHGLNALRLGYLF
MKLCSILKISPNVTDSGNKHLAPELEDFTNVFHPCSPPIQDSSNAGDVGVWTNNTRKISC
EHLVFLWGFNLGITAGMLKSLLRSSHNIFSREFDVKLVDKSCAIVVFWQPGVSKQFLDIM
NSEEMSGDLKELVSNGLRVTSYETYDRICRLGLWEMDLRESLERALENSWCDEKSNCGTK
SSEIHWYNDNVINLDDL
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgtgtttcagttgcggcgtcgtttcctctgcacgtcctcgaaatggaaggtg
aagcaggtgactacctccaacttcgaagagtccctgcaagagataaagactcacatctct
tcctccgactatgtggcggtatccatggccaggaccggctctccatcgccgccgtcctgg
ctccgccctctccccttcgacaccgcccagaccgcctactccaaggcccgccgcgccgcc
caccgcttccaggtcctccactttgcagtctgccccttctccgtctcccactccgacaaa
ctccttgctcacccttataatttcgtgctgtttccgagagacgaattgaaaatggggatg
cctgcttacagcttttcgagccagacatcgcttctcgcctccatggctcgccggggcttt
gatttcaatgcttgcgtctataatggcatatcatatctatctagagctcaagagtcagca
gctaaagttcgtcttggagctgctctcccttctcttcgagaggtgaaatcttcttcatca
cctactgttgcggacacagtttttgttgagaggactagatcacggattaaacattggaga
aagacatttgaaaggtctggcacaagcacaagcagagatgaagaacttatcaactccctt
aagaatattgtcctgggtagtgaacagttcagatcaagaccttgcatgacaatagatgta
tgcagtgaacgtcaagtgcagctaattctcgagatgttggtagaccactcagatgatctt
cttcctttgctgatccctacaaagagtgggaccacacatgcactacgaattgttctggca
aattcaaaagaagataaggaattattggagagagagcttcagaattttgaagaggaggag
agcaagaaaattcgtggatttcgagaggtgatcgattcgatttctgcttcccagaaacct
gttatctgctacaattgccttaatgattgtactctaattcattcaaaattcattgcacca
cttccactggaggtagatgaatttgtgagctctttgcactcaatttttcccaatgtactt
gacataaattacttgatgaagaaacatggaaccatgagaaaagtgaccaacattccgagt
gctatatcctacttgaataataacttctttgcaccggttgatttggaaattcctgaccaa
gctactgtaaaagaaggcaagattcatggacttaatgcattaagactaggctatttattc
atgaagctatgctctatattgaaaatttccccaaatgttactgattctggcaataagcat
ttggctccagagcttgaagatttcaccaatgtattccatccatgctcaccccctatccaa
gattcatctaatgctggggatgttggtgtctggaccaataatacaagaaaaatcagctgt
gaacatttggttttcttatggggattcaatcttggtattacagctggcatgctaaagagt
ttacttcgatcatcgcataatatcttttcaagagagtttgatgttaaattggtggacaag
agttgtgccattgttgttttctggcaacctggagtatcaaaacaatttctagacataatg
aatagtgaagaaatgagcggagacttaaaggagttagtgtcaaatggcctgagggtaacc
agttacgagacctacgacagaatatgtaggctaggtttgtgggagatggatcttagggag
tctctagaaagagctttggaaaattcttggtgtgatgaaaagagtaattgtgggacaaaa
tcttctgaaattcattggtataatgacaatgtaattaacttggatgatctttaa
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