Phaseolus vulgaris (common bean): 137826756
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Entry
137826756 CDS
T03093
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137826756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137826756
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
137826756
mRNA cycle factors
Common to processing body (P body) and stress granule
137826756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
137826756
NCBI-ProteinID:
XP_068488993
LinkDB
All DBs
Position
8:complement(54781452..54788420)
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AA seq
943 aa
AA seq
DB search
MDKAFAPSSWERAHRLYEKNLELENKQRRSAQAQVPSDPNAWQQIRENYEAIILEDHAFS
EKHNIEYALWQLHYKRIEELRAYFNAAHTSVSSKSSMGGKGPVRPDRITKIRLQFKTFLS
EATGFYHDLIMNIRAKYGLPLGYFEDAENKIIVGKDGKKSSEMKKGLISCHRCLIYLGDL
ARYKGLYGGGDSKKREYAAASSYYLQAATTWPSSGNPYHQLALLASYNEDELTTVYCYFR
SLAVDSPFSTARDNLILAFEKNRQSYSKLSGGDLKAHAVNGMGKGEAKLVTRDTGVETCP
RKEGASNIQDTYKSFCTRLVRLNGILFTRTSLETFAEVLSLVCAGLHELLSSGQDEELNF
GIDTLENKLAIVRIVSMIIFTVYNVKKDSEGQTYAEILQRAALLKNAFTAAFELMSLVVE
KCMLLRDPSCSYLLPGILVFVEWLACYPDIAAGKDEDNQAPIRSKFWNHCLSFLNRLLSL
LPMSEDEEETCFNNMSRYEEGETENRLALWEDFELRGFVPLLPAQTILDFSRKNSLGSDS
EKERKARVKRILAAGKALANVVTVDQQMIYFDSKGKKFVVGVKPQISDDFVISSFSSTPG
ADYHQYIEGEDDDEVIVFKPLVAEKGADMVVASSWAPPEGLESVPTASVGDMKFNENSTS
KPLNDANHQISLPASVNAMVPQHPPVQPHSLRWLEEEISLANSLKGLRFMENGHMMKPGL
PFKEAVAISDPPARAVPTQQSVSTGTSIFYGHDLSKADDFANSFKVDANASTGTFTDNSV
VKMSSTLQAGVKKSPVSRPSRHLGPPPGFSHVPLKQGIEPTGSDSISGNSIMDDYSWLDG
YQLPVSTKGLGPNGPLTWSQSNSHQVGNNGLSGPVSFSYTGKQIPSLQVEKQNGWQDQQT
FELLKTHQNQQLQPQVLTNGNHHFTPLPEQFQGQSIWTGQYFV
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggataaagcttttgctccttcatcatgggagcgtgctcatcgcctttatgagaagaac
cttgaattggagaataagcaaaggagatcagctcaggcacaggttccatcagatccaaat
gcttggcagcagatacgtgagaattatgaagcaataattcttgaggatcatgccttttct
gagaagcataatattgagtatgctctgtggcaattgcactataagcggattgaggaattg
agggcatactttaatgctgctcatacttctgtaagctcaaaatcatctatgggagggaaa
ggtcctgttcgacctgaccggataactaaaataaggctgcagtttaagactttcctttca
gaagcaactggattttaccatgatcttataatgaacattagagccaagtatgggcttcct
cttggttattttgaggacgcagaaaataaaattattgtggggaaggatggaaagaaatct
tctgagatgaagaaaggtttaatatcttgtcaccgttgtttgatatacttgggtgatctt
gctcgatacaaaggcttatatggtggaggtgactcaaaaaagcgtgaatatgcagcagct
tctagttactatctacaagctgcaactacatggccttcaagtggaaacccctatcatcag
cttgctttgttggcttcatataatgaggatgagctgactactgtttattgttattttcgg
agtttggctgtggatagtccattttcaactgccagggataatttgatacttgcatttgag
aagaatcgccaaagttactctaagctctctggtggtgaccttaaagctcatgcagtcaat
ggaatgggaaaaggggaagcgaaacttgtgaccagggatactggtgtagaaacctgtccc
agaaaggaaggagcatccaatatacaggacacttacaaatccttctgcacacgccttgtc
cgtcttaatggaatcttattcactcgaacaagccttgagacctttgctgaagttctatct
cttgtttgtgctggcctgcatgagcttctatcatcagggcaagatgaagagctgaatttc
ggcatagatactcttgagaacaaactggccattgtcagaattgtttccatgatcatattt
acagtttacaatgtgaaaaaggattctgaaggtcaaacgtatgcagaaattctacagcgt
gctgctctacttaagaatgcattcactgcagcttttgaattgatgagtttagtcgtagag
aaatgtatgctgctgcgggatccttcttgcagttatctcttaccaggcattttggttttt
gttgagtggttggcatgttatccagatattgctgcaggcaaggacgaagataatcaggca
cctattagatcaaaattttggaatcattgtctatccttcttgaacagattactttcactt
ttgcccatgtcagaagatgaagaggaaacctgctttaataatatgagcaggtatgaagaa
ggggaaactgaaaatcggcttgctttgtgggaggattttgagttaagaggatttgttcca
cttctccctgcgcaaaccatcttggatttttcaaggaagaattcccttgggagtgacagt
gaaaaggaaagaaaagctcgggtcaaaaggattttagctgcaggaaaggctttagcaaat
gttgttacggttgatcagcaaatgatatattttgactcaaagggaaagaaatttgtagta
ggtgttaagcctcaaatctcagatgattttgttatttcctccttttcaagtacacctggt
gcagactaccatcagtatattgaaggagaggacgacgatgaggttattgttttcaagccc
ttagtagctgagaaaggagctgatatggtggtcgcctcatcatgggcaccccctgaaggc
ttagaatcggttccaacagcatctgtaggggatatgaaatttaatgaaaattctacttct
aaacctctcaatgatgcaaatcatcaaatttctttacctgcttctgtcaatgctatggtt
cctcagcacccaccagttcaaccacattctttgaggtggttagaggaggaaatatctctt
gcgaacagtttgaaaggtcttagattcatggagaatgggcacatgatgaaacctggccta
ccatttaaagaagctgtcgcaatctctgaccctcctgcacgtgcagttcctactcagcaa
tctgtaagtactggtactagtatcttttatggtcatgatctctcaaaagctgacgacttt
gcaaattcattcaaagttgatgccaatgcgtctactggaacatttactgataactctgtt
gtgaaaatgtcatccaccttgcaagctggtgtgaaaaaatctcctgtcagtcgaccttct
aggcaccttggacctcctcctggattcagtcatgttcctcttaaacaaggtattgaaccc
actggttcagattcaattagtgggaattcaattatggatgattacagttggttggatgga
tatcagttgcctgtatcaaccaaaggtttaggtccaaatggtcctcttacttggtctcag
tcaaattctcatcaagttggtaacaatggtttgagtgggccagtcagtttttcctatact
ggaaaacaaattccgtctctgcaagtggagaaacagaatggctggcaagatcagcagact
tttgagcttttaaaaacacaccaaaatcagcagttgcagccacaggttctcacaaatgga
aatcaccattttactccactgcctgagcaattccaaggacaatcaatatggacaggtcaa
tacttcgtgtga
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