Phaseolus vulgaris (common bean): 137827176
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Entry
137827176 CDS
T03093
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137827176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137827176
03012 Translation factors [BR:
pvu03012
]
137827176
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137827176
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137827176
Translation factors [BR:
pvu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137827176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
R3H
HA2_C
Ank_2
nSTAND3
AAA_19
HA2_N
ATPase
AAA_14
AAA_22
ABC_tran
Rad17
Ank_5
AAA_7
T2SSE
AAA_23
AAA_11
AAA_16
PhoH
Sigma54_activat
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
137827176
NCBI-ProteinID:
XP_068489500
LinkDB
All DBs
Position
8:complement(54058253..54068171)
Genome browser
AA seq
1158 aa
AA seq
DB search
MTNKREKKEQAFRRQTPQVDEVTRIRISQILEQFRASKDEVYRFEAGLSNQERAWVHQMS
QKMGFRSKSSGLGKDRRVSVQKIKKKSDTDNGFENLPHFTFSEETKWVLGDLFAHYPPGD
GDLWEMVGENSDTTTEKPKQKHDDIFSRPSMTKTEIATRVEALSSRINNVSNLKQITGDR
SKLPIASFKDAITSTVESHQVVLISGETGCGKTTQVPQFILDHMWGKGEVCKIVCTQPRR
ISATSVSERISTERGETIGENVGYKIRLESRGGRQSSIVLCTTGVLLRVLVSKGSRSSKI
GHMKDDISGITHIIMDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATIDSVRFSDYF
GGCPIISVPGFTYPVKTFYLEDVLSIVKSKNDNHLDSTTCSTSINTSQLSEEEKLSMDEA
INLAWSNDEWDILLELVSSEGTPELFNYQHSLTGMTPLMVFAGKGRVGDMCMLLSCGANC
YLKAQDGMTALEIAERQNQPEAAQILKKHLDNGFSNSTEENKLLDKYLSTVNPELVDVVL
IEQLIRKICIDSTNGGILVFLPGWDEIKRTREKLFASSFFKNSSMFMLISLHSMVPSMEQ
KKVFRRPPHGCRKIVLSTNIAETAITIDDIVYVIDTGRMKEKSYDPYNNVSTLQSSWISK
ASAKQREGRAGRCQPGISYHLYSRTRAASLPDFQNPEIRRIPIEELCLQVKLLDPNCKVE
EFLGKTLDPPVFESIRNAIIILQEIGAFSNDEKLTKLGEKLGSLPVHPSICRMLFFAILM
NCLDPALTLACASEYRDPFTLAMLPEDKKRAAAAKSELASLYGGCGDQFAVLAAFECWNN
SKKMGLEARFCSQYFVSSSAMHMLSGMRRQLQAELIRNGFIHEDASSYSVNAHDPGVLHA
VLAAGLYPMVGRFIPNKIGKGYIVETSSGDKVRLHNHSTNFKLLFKKKLDHTLIVYDEIT
RSDVGMNIRNCSVVGPLPLLLLSTEIAVAPGEENDHGDQDDAGGSEDEVGSEDGMEVDAK
SGGGGGGGREDKLMSSPGNTVKVIMDRWLYFRSTAIDVAQLYCLRERLSAAILYKVTHPR
NDLPPIMAASLHAIACILSCDGCIGMPAISEGVDTLTTMVNATTLGKPASRRFGKRPKGS
LAELMNYDARQNSGPSKA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacaaaagagagaagaaagaacaggcatttcgccgccaaaccccccaagttgat
gaagtcaccaggattcgcatttcccagattctggaacagttccgagcttccaaagatgaa
gtgtacaggtttgaagctggtttgtccaaccaagagcgtgcttgggtgcatcaaatgtcc
cagaaaatggggtttagatctaaaagttctgggcttgggaaggacaggagagtgtctgtt
caaaaaataaaaaagaagtctgacactgataatgggtttgaaaatcttcctcatttcaca
ttttctgaagagacaaagtgggtgctgggtgatttatttgctcattatcctcctggtgat
ggagacttgtgggagatggttggagaaaatagtgacactaccactgaaaaaccaaaacag
aagcatgatgatattttcagcaggccctcgatgaccaaaactgaaattgctacgagagtg
gaagctctttcttctagaattaacaacgtctctaacttgaaacagatcactggagataga
tctaagcttccaattgcatctttcaaggatgcaattacatcaactgttgaatctcaccag
gtagttctcatatctggtgaaactggttgcggaaagactacgcaggttccacagtttatt
ttggatcatatgtggggtaagggagaggtatgtaaaatagtttgtactcagcctcggcgg
atctctgcaacttcagtttctgagagaatctccactgagagaggagagactattggagaa
aatgtgggatataagatacggttagaaagcagagggggaagacaatcatcaattgtgcta
tgtactactggagtgctattaagggtgttggtttccaaaggttcccgttcgtcaaagata
gggcacatgaaggatgacatttctggaatcactcacataattatggacgaaattcatgaa
agggatcgatactctgacttcatgttggcaatcatcagagacatgctcccttcatatcct
cacctacgtctgatattaatgagtgccaccattgattctgtgagattttctgattacttt
gggggctgcccaatcataagtgtcccgggattcacttatccggtcaaaactttctatttg
gaggacgtactttctatcgtaaaatctaagaatgataatcatcttgatagtaccacatgc
agtacttctataaacactagtcagctaagtgaagaagagaagctttctatggatgaagct
attaatttggcttggtctaatgatgagtgggacatactattagagttggtttcttctgaa
ggaaccccagaactcttcaattaccaacattctttaactggcatgactccattaatggtg
tttgctgggaagggtagagtgggtgatatgtgcatgctcttatcttgtggggcaaattgc
tatttaaaggcccaggatggaatgactgcactggagattgctgaaaggcaaaaccaacca
gaagcagctcaaatattgaagaagcacttagacaatggtttttccaactccacagaagag
aataagctacttgataaatacctgtcaacagtcaacccagaacttgttgatgttgttttg
atagagcagctgataagaaaaatatgcattgattcgacaaatggagggatccttgttttt
cttccgggctgggatgaaataaaaagaacacgtgagaaattgtttgcatcatcttttttc
aagaattcctcaatgtttatgctcatatctctacattcaatggttccaagcatggaacaa
aagaaggtttttaggcgcccaccccatggttgccgcaaaattgtactatcaacaaatatt
gctgaaacagctatcaccattgatgatatagtgtatgtcatagacactggacgaatgaag
gaaaaaagttatgatccttataacaatgtgtcaactcttcagtcatcttggatttcaaaa
gcaagtgctaagcagcgagagggacgtgctggccgctgtcaacctggaataagctatcat
ctatactcaaggactcgagcagcttccttaccagattttcagaatccagaaattaggaga
atacctattgaggagctttgtctgcaggtaaagttgctagatccaaattgcaaagtagaa
gaatttctaggcaagacgctagatcctccagtttttgagtccatacgcaacgccattata
attcttcaagagattggggcattttcaaatgatgaaaaactcaccaaactaggggagaag
cttggttctcttcctgttcacccatcaatctgcaggatgctttttttcgctatattgatg
aactgcctcgatccagctttaaccctcgcctgcgcatctgagtatagagatccatttaca
cttgcaatgttacctgaagataaaaagagagccgcagctgccaaatctgagcttgcttct
ctatatgggggttgtggtgatcagtttgctgtattggctgcatttgaatgctggaataat
tcaaagaaaatgggtctagaagcacgattttgttctcagtattttgtgtcttcaagtgcc
atgcatatgttatctggcatgcgcaggcaacttcaagcggaactaattcgaaatgggttt
atccatgaagatgcttcaagttacagtgtgaatgcacatgaccctggtgtgctccatgcg
gttttggcagcaggattatatccaatggttgggagatttataccaaataaaattggaaaa
gggtatatagttgaaacatcaagtggtgataaagttcggttgcacaatcattctacaaat
ttcaagttgttattcaagaaaaaattagatcacactttaattgtgtacgatgagattact
cgtagtgatgtgggtatgaacataaggaactgctcagttgttggaccacttccacttttg
ctgctttcaacagagattgctgttgctccaggtgaagaaaatgaccatggggatcaggat
gatgcaggagggagtgaagatgaagttggaagtgaagatgggatggaggttgatgctaag
tccggtggaggtggaggcggaggccgtgaggataagttgatgtcttctcctggtaacacg
gttaaagtaatcatggaccgttggctttattttcgttcaacagcaatcgatgttgctcag
ctatactgcttgagagagcgattatcagcagcaattttatacaaagtgacacatccaagg
aatgatcttcctcccatcatggcggcttctttgcatgccatagcttgtattttgtcttgt
gatgggtgcattggtatgccagcaatttcagaaggcgtggacacactaaccactatggta
aatgcaacaaccttaggcaagccagcatctaggcgatttggtaagagaccaaaaggatcc
cttgcagagcttatgaattatgatgctcgccaaaactctgggccttctaaagcctag
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