Phaseolus vulgaris (common bean): 137827205
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Entry
137827205 CDS
T03093
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137827205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137827205
03036 Chromosome and associated proteins [BR:
pvu03036
]
137827205
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137827205
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
137827205
mRNA degradation factors
5'-3' decay
Decapping complex
137827205
Chromosome and associated proteins [BR:
pvu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
137827205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
EPL1
TFIIA
eIF-3_zeta
Motif
Other DBs
NCBI-GeneID:
137827205
NCBI-ProteinID:
XP_068489537
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All DBs
Position
8:6076125..6082875
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AA seq
512 aa
AA seq
DB search
MNNRDRERYPPGMGLGRGLNSNPGFQPRPHQQHQYVQRHMVQHHHPQQYQQNHHHQQQHQ
QHHQQHQHQQQQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEAVDPSSQDWKARLNI
PAPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILA
RAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVT
TGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCIMKDCSMLVMDEADKLLSPEFQPS
IEQLIQFLPGTRQILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQYYAFVEER
QKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHD
FRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT
YEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatagagatagagaaaggtacccacctgggatggggttaggaagagggttgaac
tcgaaccctgggtttcaaccgaggccacatcagcaacatcaatatgtgcagaggcacatg
gtgcagcaccatcatccgcagcagtatcaacagaaccaccaccatcagcaacaacatcaa
cagcatcatcagcagcatcagcatcagcagcaacagcaacaacaacaacagcaacagtgg
ttgagaaggaaccagttaggtggtgggaccgacaccaacgttgtcgaggaggttgagaag
actgtacagtctgaagccgttgacccaagttcacaagattggaaggcaagactaaatatc
cctgcacctgatacacgctacaaaacagaggatgtgacagcaactaaaggcaatgaattt
gaggattactttttgaagcgtgagctgcttatgggaatatacgagaagggttttgaaagg
ccatctcctatccaagaggaaagcattccgattgctcttactggtagtgacattcttgct
agggctaaaaatggaacaggcaaaacagctgcattttgtattcctgcattggaaaaaatt
gaccaggataataatgttattcaagttgtaatattggtcccaactcgagagctggctttg
caaacatcccaagtgtgtaaagagcttggaaaacatttgaaaattcaagttatggttaca
acaggtggtaccagcctaaaagatgatattatgcgtttatatcaaccagttcatctgcta
gttggaactccaggaagaatattagatcttgcaaagaagggtgtttgcattatgaaagat
tgctctatgcttgttatggatgaggctgataagcttctctccccagagttccaaccttca
atagaacagctgattcaatttcttcctggaacccgtcaaattctgatgttttctgctaca
tttcctgttactgttaaggatttcaaagatagatatctacgtaagccgtatgttattaac
cttatggatgagctaactctgaaaggtattacacaatattatgcatttgtggaagagagg
cagaaagtccactgcctaaatactcttttctctaagctgcaaataaaccagtcaatcatt
ttctgcaattccgtgaatcgggttgaacttcttgccaagaaaatcactgaacttgggtat
tcgtgtttctatattcatgcaaagatgttgcaagaccaccgtaatagagtatttcatgac
ttccgcaatggtgcctgcagaaatcttgtttgtactgatcttttcacaaggggaatagac
atccaggcagtcaatgttgttattaattttgattttccgaagaactcggaaacctaccta
catagggttggtcgttcagggaggtttgggcacctaggtttagcggtgaacttgatcacc
tatgaggatcgcttcaatttatatagaattgaacaagaacttggcactgaaataaaacaa
attccgccacacattgatcaagcaatttattgccggtga
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