Phaseolus vulgaris (common bean): 137827991
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Entry
137827991 CDS
T03093
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137827991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvu03021
]
137827991
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137827991
Transcription machinery [BR:
pvu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137827991
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
137827991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
zf_UBZ
Pcf11_C
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
137827991
NCBI-ProteinID:
XP_068490483
LinkDB
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Position
7:complement(4368816..4371307)
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AA seq
667 aa
AA seq
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MSFPACLSLSVTHILCLVGAEKWHSSVTASNTNFGSVAIARHKLLSDSSRLGISFSPSRI
GLDRSLSTSMEKYTFHNCGGRLIERNSLHHVVDYGVGRTVEMSVRCRMQYSGCNQFPTSI
THIPSNEYHPESSRALIESYGNEKSQECPSSKALLVEQMDINCIGNKVWSQSWLTTEEEE
FDWKDIKSTLIDHGRNQSLLPSTVGFSGERPVLADNATLSEQNAWKYRSSGSQLPPLDDS
SAMELKYIPLEMIAISFMQMKHSLVSSQSHCARKTSHHPYNSSQHIFSDRDQARTLTKPS
INHTRRSYFNPYGVRHAVPKMVSGIASNVKPPPSVVLASSETPPSANQNVTRSPILNPIL
PGQISSNQKNHWKAPQPQFFPSQDPSTSQFSQGMSSGHGESTCTTMLNPLPVQFPSSLPS
IANHPFHPSHPPASSQMMKPHSNVGPVMSSQQADSLASQISQVISRDKLLPTQKCIGTEF
NAVNLKVRYESVVNALYGDLPRQCSTCGLRFRSQEEHRSHMDWHVTKNRALKTRKQRSSR
QFFVSERMWLSGAEALGTKSVPSFFPTETKEEKKDYEELAVSADENQKTCFLCKEPFDEF
YSDEMDDWMYRGAAYLYQPTGTLAAMDRSQLGPIIHAKCRSESKRPPSQHLRKHDYEEGT
PRKRMRI
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttcctgcatgtttgtctttatcagttactcatattttatgtctggttggtgct
gaaaagtggcattcatcagtaactgctagtaatacaaactttggctctgtggctatagca
agacacaaacttttatcagacagtagcaggcttggaatttccttttccccttcaagaatt
ggacttgataggtctctgtctacatcaatggaaaaatatacatttcacaattgtggtggc
aggttaattgagagaaactctcttcatcacgtagttgactatggagtaggtagaactgtg
gaaatgagtgtaaggtgtcgaatgcagtattctgggtgtaatcaatttccaacttctatc
actcacatccctagtaatgaatatcatcctgaaagttccagagctttaattgaatcatat
ggcaatgagaaaagccaagaatgtccaagcagtaaagcactgttagttgaacagatggat
ataaactgcataggcaataaggtgtggtcacaatcatggttgaccactgaagaggaggag
tttgactggaaagatattaagtcaaccctaatagaccatggcaggaatcaaagtttatta
ccttcaactgttggcttctcaggggaaagacctgttcttgcagataatgcaactttgtca
gagcaaaatgcctggaagtatcggtctagtggatctcagcttcctcctcttgatgattcc
tctgctatggagctaaaatatatacctctagaaatgattgcaatttcgtttatgcagatg
aagcatagcctggtctcctctcaatctcattgtgctaggaagacttctcatcatccctat
aactcgtcacaacatatctttagtgatagggatcaagcaaggactcttacgaaaccttca
attaatcacactcgcagaagttatttcaacccatatggcgttcgacatgcagtgccaaaa
atggtttctggcattgcttctaatgtgaaacctccaccatcagttgtgctagcatcttct
gaaacaccaccttctgcaaatcagaatgtcactcgatctcctatcttaaatccaatactt
cctggacaaatttcttccaaccagaaaaatcactggaaagcaccacagccacagtttttt
ccatctcaggatccatcaacctcacagtttagtcaagggatgagttcgggacatggtgaa
tctacatgtacaaccatgttgaatccgttacctgtgcaattcccttcatcactcccaagt
attgcaaaccacccttttcatccaagtcatcctcctgcttcatctcaaatgatgaaacct
cattcaaatgttggtccagttatgtcaagccaacaggccgattcacttgcttctcaaatt
tctcaggtcatctcacgggataaactgctgccaacacagaaatgtatcggaacagagttt
aatgcagtcaatctgaaggttcggtatgagtctgtagtgaatgccttgtatggtgatctc
ccaagacaatgcagtacttgtgggctccgattcagaagccaagaggaacacagaagtcat
atggattggcatgtgactaagaatcgggcgcttaaaacgcggaagcagagatcaagtcgc
caattctttgtgagtgaaaggatgtggcttagtggtgcagaggcattgggaacaaagtca
gttccatcttttttcccaacagaaacaaaagaagaaaagaaagattatgaagagttggca
gtgtcagcagatgagaaccagaaaacatgttttctatgtaaagagccttttgatgagttt
tacagtgatgaaatggatgactggatgtatagaggagctgcatacctctatcaacccaca
ggaacattagcagccatggacaggtcacagttaggtcccataatccatgccaaatgcaga
tcagaatctaaaaggcctccctcccaacatcttcgaaagcatgattatgaagagggtacc
ccaaggaaacgaatgcggatttga
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