Phaseolus vulgaris (common bean): 137828137
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Entry
137828137 CDS
T03093
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137828137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137828137
03012 Translation factors [BR:
pvu03012
]
137828137
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137828137
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137828137
Translation factors [BR:
pvu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137828137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
nSTAND3
AAA_22
AAA_19
ATPase
NPHP3_N
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
137828137
NCBI-ProteinID:
XP_068490689
LinkDB
All DBs
Position
7:complement(2748579..2760402)
Genome browser
AA seq
1192 aa
AA seq
DB search
MLSLTQPSCIPKTLKPSVPLPFPAMKDRRTPSSYGSVYIPPHHRLRSVANFNNSPSPVRA
KPHENPTHTITTLQPPSTEPVPDKARSRFVSAYDDTVSEEGSDREFEPPSLARASKFAYP
NASLNDNTDEWKRKFTMLLNDKSKQELISREKRDRRDFERIAVVASRMGLYSHMYAKVVV
FSKVPLPNYRYDLDDRKPQREVSLSITTFTRVKAHFEEYLSQKARMNKSCLDLSSARSSS
NGSIGMDEGLFEQPEPLASSKAVMEKIVWQRSLQMRDQQQAWQESAEGTRMLEFRRSLPA
YKKKEEILSVTSRNQVVIISGETGCGKTTQIPQFILESEIESVRGAACNIICTQPRRISA
MSVSERVACERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADRKLKGVTHVI
VDEIHERGMNEDFLLIILKELLPRRPELKLILMSASLDAELFSSYFNGAPTMFIPGFTYP
VKTHFLENILEMTGYRLTPYNQIDDYGQEKMWKMNRQVPRKRKSQIASAVEDAIKAADFK
DYSSHTQESLSCWNPDCIGFSLIEYILCNICENERPGAVLVFMTGWDDINSLKEKLLTHT
VLGDPNRVLLLTCHGSMASSEQRLIFEEPEAGVRKIVLTTNIAETSITINDVVYVLDCGK
AKETSYDALNNTPCLLPTWISKVSSQQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEI
LRTPLQSLCLQIKSLRLGSISEFLSRALQSPEILAVQNAIEYLKIIGALDEDENLTILGR
YLTMLPMEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFLTPLDKKDLAEAAKSQFCGA
YSDHLALVRAHEGWKDAEVDLGGYEYCWKNFLSLQSMKAIDALRREFICLLKDTGLVDSN
AASCNAWSSDVNLIRAVICYGLYPGIGSVVNNEKSFSLKTMEDGQVLLYSNSVNARETKI
PYPWLVFNEKIKVNSVFLRDSTAVSDSVVLLFGGSLLKGDADNHLKMLGGYLEFFVDPSV
VDLYQSIRRELDAFIQSKLLFPRMGIQWYHDLLSAVRLLISNDLCEGRFVFGRQVLKPPK
KSITMASNPTLVSRTESGPGGDNSKSQLQTLLTRSGYAAPVYRTKQLKNNQFQATVEFNG
IQTMGQPCNNKKSAEKDAAAEALQWLMGGKQTGREYIKHLSMLIKKSKKDHN
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgctctcgcttacgcaaccttcgtgcattcccaaaaccctaaaaccctccgttcccctt
ccgtttccggccatgaaggaccgccgaacgccgtcctcctatggctccgtttacattccg
ccgcaccaccgtttgcgctccgtcgccaatttcaacaactcaccctctccggttcgcgcc
aaaccccacgaaaaccctacacacaccattactactctgcaaccgccgtcgacggagcca
gttcccgataaggcacgttcgcgcttcgtttctgcttatgacgacaccgtttcggaggaa
ggctccgatcgtgaattcgaacctccctcactagcgcgtgcttccaaatttgcttatccg
aatgcttcgcttaatgacaacactgacgagtggaagcggaaatttaccatgctcttaaat
gacaagagtaagcaagagttaatctcgagggagaaaagggataggcgtgattttgagcga
atagcagttgttgcaagcagaatggggttgtatagccatatgtatgctaaggttgttgtc
ttcagtaaggtcccacttccaaattacagatatgatttggacgatcggaagcctcagagg
gaggtgagcttgtctatcaccacatttacccgtgtaaaggcacattttgaggaatatctt
agccaaaaagccaggatgaataaaagctgtttggatttgtcatctgcaagatcaagtagt
aatggcagtattggtatggatgaggggctttttgagcaacctgagccactagcatcaagt
aaggctgttatggagaaaattgtttggcagaggagcttacaaatgcgtgatcagcagcaa
gcttggcaggaatctgctgaaggaactagaatgctagaatttcgcagaagtctcccagct
tataaaaagaaagaagaaatattatcagtcacatcaaggaatcaggtagttatcatttca
ggcgaaacaggttgtggcaagacaacacaaattccacaatttattttagaatctgagata
gaatcagttcgtggagctgcttgtaatatcatatgcacacagccaagacgcatttcagcc
atgtcagtttctgaaagagtggcctgtgagaggggagagaaattgggcgaatctgttgga
tataaagttcgacttgagggtatgaaagggagagatacccatcttctcttttgcaccaca
ggcattttattaagaagattactagctgatagaaagttaaaaggcgtaactcatgttatt
gtggatgaaattcatgagcgtgggatgaatgaagattttctgcttattattcttaaagaa
ctccttccccgtcgaccagaactgaaactaattttgatgagtgctagcctagatgcagag
ctcttttcttcgtactttaatggggctccaactatgtttattccgggcttcacatacccc
gttaaaactcattttctggagaacattcttgaaatgacggggtacagattaactccttat
aatcaaattgatgattatggtcaagaaaagatgtggaaaatgaacagacaggtcccaaga
aagaggaaaagtcaaattgcttctgctgtagaggatgcaattaaagctgctgatttcaaa
gattacagctcacatacacaggagtctttgtcatgttggaatcctgactgtattggtttt
agtctcatagaatatattttgtgcaatatatgtgagaatgaaagacctggtgctgttttg
gttttcatgactggatgggatgatataaactctctgaaagagaagctcctgacacatact
gtcttgggagatccaaaccgtgttttgttgcttacatgtcatggctcaatggctagctca
gagcagagattaatatttgaagaacctgaagctggagtaagaaaaatagtgcttacaaca
aatattgctgaaaccagtattacaataaatgatgttgtttatgttcttgactgcggaaaa
gcgaaagaaacatcatatgatgctctgaataacacaccttgtctgcttcctacatggatt
tctaaggtttcttctcaacaaagaagaggaagagcaggtcgggtacaaccaggagagtgt
taccatctctatcctagatgtgtgtatgatgcatttgcggaatatcaattaccagaaatt
ttgagaacaccgttgcaatccctctgtttacaaattaaaagtttaagacttggaagtata
tccgagttcttgtccagggctttgcaatctcctgagatacttgcggtacaaaatgcaatt
gaatatttaaaaataattggagctttggatgaggatgagaatctcactattctagggcgc
tatttgacaatgcttcccatggaacccaaacttggcaagatgctaatattaggtgctatt
ttcaattgcctggatcccatattaactgttgttgctgggcttagcgtgagagatcctttt
cttacaccattggataaaaaagatcttgcagaggctgcaaaatctcaattctgtggtgca
tatagtgaccaccttgcacttgtaagggcacatgaaggttggaaagatgctgaagtggac
ctgggtggatatgaatactgctggaaaaattttctttccttgcaatccatgaaagctatt
gatgctcttcggagagagttcatatgcctgctcaaggataccggattagttgatagcaat
gcagccagctgcaatgcatggagctctgatgtaaatcttatccgagcagttatttgctat
ggtctatatcctggaattggttctgttgtgaataatgagaaatcattctctttgaaaaca
atggaggatggtcaagtgctcctatattcgaactcagtgaatgctcgggagactaaaatt
ccatatccatggcttgtttttaacgagaagataaaagtgaattccgtttttctccgtgac
tcaacagctgtgtctgattcagtggtgcttctgtttggtggaagcttattgaagggagat
gctgataatcacttaaaaatgttgggaggatatcttgagttttttgtggatcccagtgtt
gttgatttgtaccagagtataaggagagaacttgatgccttcattcagagcaaactactt
tttccaagaatgggcatacagtggtatcatgatctcctatctgcagtacggctgctgata
tcgaatgacctatgtgaaggtagatttgtatttggtcgccaggtccttaaaccaccaaag
aaatctattacgatggcctcaaatccaaccttggtttcaaggactgagagtggacctggg
ggagataattctaaaagtcagctccaaacattgcttaccagatcaggatatgcagcaccc
gtctacaggactaaacaattgaagaacaatcagtttcaggctacagttgaattcaatgga
attcagacaatgggtcaaccttgtaacaataaaaagagtgcagaaaaagatgctgcagct
gaggcattgcagtggctgatgggtggaaagcaaacaggcagggagtatatcaaacacttg
tcaatgttaattaagaaaagtaagaaggatcacaattaa
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